RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	PPP1R12B	O60237	982 aa	Predicted RBP	11.13	□□□□□ -0.63
SYNE2-222	ENST00000556725	DDX58	O95786	925 aa	Known RBP	11.13	□□□□□ -0.63
SYNE2-222	ENST00000556725	SP3	Q02447	781 aa		11.13	□□□□□ -0.63
SYNE2-222	ENST00000556725	KSR2	Q6VAB6	950 aa		11.13	□□□□□ -0.63
SYNE2-222	ENST00000556725	TSPYL6	Q8N831	410 aa		11.13	□□□□□ -0.63
SYNE2-222	ENST00000556725	SZT2	Q5T011	3432 aa		11.13	□□□□□ -0.63
SYNE2-222	ENST00000556725	LAMB1	P07942	1786 aa		11.13	□□□□□ -0.63
SYNE2-222	ENST00000556725	TESPA1	A2RU30	521 aa	Predicted RBP	11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725		H7C1W4	665 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	MYC	P01106	439 aa	Predicted RBP	11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	PYGB	P11216	843 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	ITGA6	P23229	1130 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	IGHMBP2	P38935	993 aa	Known RBP	11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	WDR43	Q15061	677 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	CFAP100	Q494V2	611 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	UBE3B	Q7Z3V4	1068 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	MTMR14	Q8NCE2	650 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	HELB	Q8NG08	1087 aa	Predicted RBP	11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	ZNF333	Q96JL9	665 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	VEZT	Q9HBM0	779 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	IFT57	Q9NWB7	429 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	PCDHB8	Q9UN66	801 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	JAG2	Q9Y219	1238 aa		11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	COL1A1	P02452	1464 aa	Predicted RBP	11.12	□□□□□ -0.63
SYNE2-222	ENST00000556725	IRS2	Q9Y4H2	1338 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	FAM205C	A6NFA0	338 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	NEURL1B	A8MQ27	555 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	TAF5L	O75529	589 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	GNAI1	P63096	354 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	CHRND	Q07001	517 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	SUPT20HL1	Q3ZLR7	823 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	CCDC30	Q5VVM6	783 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	OTUD7B	Q6GQQ9	843 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	G2E3	Q7L622	706 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	MS4A4A	Q96JQ5	239 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	ANKRD2	Q9GZV1	360 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	ELP3	Q9H9T3	547 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	PTCH2	Q9Y6C5	1203 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	ECM29	Q5VYK3	1845 aa		11.11	□□□□□ -0.63
SYNE2-222	ENST00000556725	UNCX	A6NJT0	531 aa		11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	APAF1	O14727	1248 aa		11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	KCNJ4	P48050	445 aa		11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	IREB2	P48200	963 aa	Known RBP	11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	RASA3	Q14644	834 aa		11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	ANKRD13A	Q8IZ07	590 aa		11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	OPTN	Q96CV9	577 aa		11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	MPHOSPH8	Q99549	860 aa		11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	RTN4	Q9NQC3	1192 aa	Known RBP	11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	PPP2R3B	Q9Y5P8	575 aa		11.1	□□□□□ -0.63
SYNE2-222	ENST00000556725	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725		H0YGN5	161 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	CSF1R	P07333	972 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	CASP7	P55210	303 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	NEXN	Q0ZGT2	675 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	SLC4A8	Q2Y0W8	1093 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	SLC9C1	Q4G0N8	1177 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	BRI3BP	Q8WY22	251 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	PLA2G12B	Q9BX93	195 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	ZSWIM8	A7E2V4	1837 aa		11.09	□□□□□ -0.63
SYNE2-222	ENST00000556725	OTOF	Q9HC10	1997 aa		11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	MYO1B	O43795	1136 aa		11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	IL1R1	P14778	569 aa		11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	RBM5	P52756	815 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	GCKR	Q14397	625 aa		11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	C15orf52	Q6ZUT6	534 aa	Known RBP	11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	SH3TC2	Q8TF17	1288 aa		11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	ARHGAP39	Q9C0H5	1083 aa		11.08	□□□□□ -0.64
SYNE2-222	ENST00000556725	DDX10	Q13206	875 aa	Known RBP	11.07	□□□□□ -0.64
SYNE2-222	ENST00000556725	TAF1C	Q15572	869 aa	Predicted RBP	11.07	□□□□□ -0.64
SYNE2-222	ENST00000556725	NBPF11	Q86T75	865 aa		11.07	□□□□□ -0.64
SYNE2-222	ENST00000556725	FAM43A	Q8N2R8	423 aa		11.07	□□□□□ -0.64
SYNE2-222	ENST00000556725	TSR2	Q969E8	191 aa	Known RBP	11.07	□□□□□ -0.64
SYNE2-222	ENST00000556725	TEPSIN	Q96N21	525 aa		11.07	□□□□□ -0.64
SYNE2-222	ENST00000556725	TDRD3	Q9H7E2	651 aa	Known RBP	11.07	□□□□□ -0.64
SYNE2-222	ENST00000556725	ZNF70	Q9UC06	446 aa	Predicted RBP	11.07	□□□□□ -0.64
SYNE2-222	ENST00000556725	CCL15-CCL14	A0A0B4J2E2	113 aa		11.06	□□□□□ -0.64
SYNE2-222	ENST00000556725	PLIN1	O60240	522 aa		11.06	□□□□□ -0.64
SYNE2-222	ENST00000556725	ECM2	O94769	699 aa	Predicted RBP	11.06	□□□□□ -0.64
SYNE2-222	ENST00000556725	FKBP1A	P62942	108 aa	Known RBP	11.06	□□□□□ -0.64
SYNE2-222	ENST00000556725	CCL15	Q16663	113 aa		11.06	□□□□□ -0.64
SYNE2-222	ENST00000556725	ZFYVE28	Q9HCC9	887 aa		11.06	□□□□□ -0.64
SYNE2-222	ENST00000556725	ANKRD18B	A2A2Z9	1011 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	TCP10L2	B9ZVM9	353 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	MAP3K9	P80192	1104 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	FOXO4	P98177	505 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	CALD1	Q05682	793 aa	Known RBP	11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	VGLL4	Q14135	290 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	ZNF804A	Q7Z570	1209 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	SPOCK2	Q92563	424 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	ZNF594	Q96JF6	807 aa	Predicted RBP	11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	STK31	Q9BXU1	1019 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	TMEM39B	Q9GZU3	492 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725		A0A1B0GUL6	1792 aa		11.05	□□□□□ -0.64
SYNE2-222	ENST00000556725	TRIOBP	Q9H2D6	2365 aa		11.04	□□□□□ -0.64
SYNE2-222	ENST00000556725	GTF2A2	P52657	109 aa		11.04	□□□□□ -0.64
SYNE2-222	ENST00000556725	ARHGEF6	Q15052	776 aa		11.04	□□□□□ -0.64
SYNE2-222	ENST00000556725	MTFR1	Q15390	333 aa		11.04	□□□□□ -0.64
SYNE2-222	ENST00000556725	GRIK5	Q16478	980 aa		11.04	□□□□□ -0.64
SYNE2-222	ENST00000556725	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.04	□□□□□ -0.64

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