RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 HDAC9Q9UKV0 1011 aa13.48□□□□□ -0.25
SHMT2-220ENST00000555634 MCCP23508 829 aa13.47□□□□□ -0.25
SHMT2-220ENST00000555634 CWC27Q6UX04 472 aaKnown RBP13.47□□□□□ -0.25
SHMT2-220ENST00000555634 MAGEB6Q8N7X4 407 aa13.47□□□□□ -0.25
SHMT2-220ENST00000555634 APPBP2Q92624 585 aa13.47□□□□□ -0.25
SHMT2-220ENST00000555634 EDC3Q96F86 508 aaKnown RBP13.47□□□□□ -0.25
SHMT2-220ENST00000555634 DDRGK1Q96HY6 314 aa13.47□□□□□ -0.25
SHMT2-220ENST00000555634 PIH1D3Q9NQM4 214 aaKnown RBP13.47□□□□□ -0.25
SHMT2-220ENST00000555634 HELLSQ9NRZ9 838 aa13.47□□□□□ -0.25
SHMT2-220ENST00000555634 MYH8P13535 1937 aa13.47□□□□□ -0.25
SHMT2-220ENST00000555634 ZC3H4Q9UPT8 1303 aaKnown RBP13.46□□□□□ -0.25
SHMT2-220ENST00000555634 ADAMTSL1Q8N6G6 1762 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 BAG3O95817 575 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 PDE6AP16499 860 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 PLCG2P16885 1265 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 CHMLP26374 656 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 UBE3CQ15386 1083 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 CIAPIN1Q6FI81 312 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 OGFOD1Q8N543 542 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 AIDAQ96BJ3 306 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 ANTXR1Q9H6X2 564 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 RNF181Q9P0P0 153 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 JAG2Q9Y219 1238 aa13.46□□□□□ -0.25
SHMT2-220ENST00000555634 ZNF532Q9HCE3 1301 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 COL4A5P29400 1685 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 CYP7A1P22680 504 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 ADD2P35612 726 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 MMP14P50281 582 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 NMIQ13287 307 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-220ENST00000555634 MCMDC2Q4G0Z9 681 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 ESYT1Q9BSJ8 1104 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 ANO2Q9NQ90 1003 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 MYH1P12882 1939 aa13.45□□□□□ -0.26
SHMT2-220ENST00000555634 CCDC171Q6TFL3 1326 aa13.44□□□□□ -0.26
SHMT2-220ENST00000555634 YBX3P16989 372 aaKnown RBP eCLIP13.44□□□□□ -0.262e-9■□□□□ 8.6
SHMT2-220ENST00000555634 GNAT2P19087 354 aa13.44□□□□□ -0.26
SHMT2-220ENST00000555634 RPS12P25398 132 aaKnown RBP13.44□□□□□ -0.26
SHMT2-220ENST00000555634 YY1P25490 414 aa13.44□□□□□ -0.26
SHMT2-220ENST00000555634 PRDX5P30044 214 aa13.44□□□□□ -0.26
SHMT2-220ENST00000555634 MECOMQ03112 1051 aa13.44□□□□□ -0.26
SHMT2-220ENST00000555634 C8orf34Q49A92 452 aa13.44□□□□□ -0.26
SHMT2-220ENST00000555634 TEKT1Q969V4 418 aa13.44□□□□□ -0.26
SHMT2-220ENST00000555634 TTF2Q9UNY4 1162 aaKnown RBP13.44□□□□□ -0.26
SHMT2-220ENST00000555634 MROH7-TTC4A0A0A0MT08 1334 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 MAGEB6P1A0A0J9YX57 407 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 RAD17O75943 681 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 ZMYM1Q5SVZ6 1142 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 DACT2Q5SW24 774 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 RSBN1LQ6PCB5 846 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-220ENST00000555634 AMOTL1Q8IY63 956 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 AGBL3Q8NEM8 1001 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 NACAP1Q9BZK3 213 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 SCN4AP35499 1836 aa13.43□□□□□ -0.26
SHMT2-220ENST00000555634 BAZ2AQ9UIF9 1905 aaKnown RBP13.43□□□□□ -0.26
SHMT2-220ENST00000555634 A0A0D9SFI3 127 aa13.42□□□□□ -0.26
SHMT2-220ENST00000555634 F8W031 263 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-220ENST00000555634 PSMD14O00487 310 aa13.42□□□□□ -0.26
SHMT2-220ENST00000555634 EPB41L2O43491 1005 aaKnown RBP13.42□□□□□ -0.26
SHMT2-220ENST00000555634 RBM5P52756 815 aaKnown RBP eCLIP13.42□□□□□ -0.26
SHMT2-220ENST00000555634 KIAA0825Q8IV33 1275 aa13.42□□□□□ -0.26
SHMT2-220ENST00000555634 NSUN4Q96CB9 384 aaKnown RBP13.42□□□□□ -0.26
SHMT2-220ENST00000555634 FAM227BQ96M60 508 aa13.42□□□□□ -0.26
SHMT2-220ENST00000555634 CRNKL1Q9BZJ0 848 aaKnown RBP13.42□□□□□ -0.26
SHMT2-220ENST00000555634 TMOD2Q9NZR1 351 aa13.42□□□□□ -0.26
SHMT2-220ENST00000555634 YDJCA8MPS7 323 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 SGSM2O43147 1006 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 MYO1BO43795 1136 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 MBD4O95243 580 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 VIL1P09327 827 aaKnown RBP13.41□□□□□ -0.26
SHMT2-220ENST00000555634 LMOD1P29536 600 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-220ENST00000555634 HDLBPQ00341 1268 aaKnown RBP13.41□□□□□ -0.26
SHMT2-220ENST00000555634 RNF20Q5VTR2 975 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 GPC2Q8N158 579 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 BACH2Q9BYV9 841 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 SERPINA10Q9UK55 444 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 GJA3Q9Y6H8 435 aa13.41□□□□□ -0.26
SHMT2-220ENST00000555634 RPAP1Q9BWH6 1393 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-220ENST00000555634 DDX60LQ5H9U9 1706 aaKnown RBP13.4□□□□□ -0.26
SHMT2-220ENST00000555634 FZD9O00144 591 aa13.4□□□□□ -0.26
SHMT2-220ENST00000555634 GPAA1O43292 621 aa13.4□□□□□ -0.26
SHMT2-220ENST00000555634 APPP05067 770 aa13.4□□□□□ -0.26
SHMT2-220ENST00000555634 USP17L8P0C7I0 530 aa13.4□□□□□ -0.26
SHMT2-220ENST00000555634 C9orf131Q5VYM1 1079 aa13.4□□□□□ -0.26
SHMT2-220ENST00000555634 DPY19L2Q6NUT2 758 aa13.4□□□□□ -0.26
SHMT2-220ENST00000555634 CTNNA3Q9UI47 895 aa13.4□□□□□ -0.26
SHMT2-220ENST00000555634 USP5P45974 858 aa13.39□□□□□ -0.27
SHMT2-220ENST00000555634 TDO2P48775 406 aa13.39□□□□□ -0.27
SHMT2-220ENST00000555634 CXCL9Q07325 125 aa13.39□□□□□ -0.27
SHMT2-220ENST00000555634 HHIPL2Q6UWX4 724 aa13.39□□□□□ -0.27
SHMT2-220ENST00000555634 MIGA1Q8NAN2 632 aa13.39□□□□□ -0.27
SHMT2-220ENST00000555634 AATFQ9NY61 560 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHMT2-220ENST00000555634 U3KPZ7 1027 aaPredicted RBP13.39□□□□□ -0.27
SHMT2-220ENST00000555634 GAKO14976 1311 aa13.39□□□□□ -0.27
SHMT2-220ENST00000555634 TCRBV5S4A2TA0A5A2 114 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 M0R2C6 588 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 ZKSCAN1P17029 563 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-220ENST00000555634 BTDP43251 543 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 CRKP46108 304 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 SCNN1DP51172 638 aa13.38□□□□□ -0.27
SHMT2-220ENST00000555634 DLGAP5Q15398 846 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms