RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 LMNB1P20700 586 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 ADD2P35612 726 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 C9orf131Q5VYM1 1079 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 USP17L1Q7RTZ2 530 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 KIAA0825Q8IV33 1275 aa13.01□□□□□ -0.33
TDP1-211ENST00000555178 NSUN4Q96CB9 384 aaKnown RBP13.01□□□□□ -0.33
TDP1-211ENST00000555178 PDS5AQ29RF7 1337 aaKnown RBP13.01□□□□□ -0.33
TDP1-211ENST00000555178 BAZ2AQ9UIF9 1905 aaKnown RBP13□□□□□ -0.33
TDP1-211ENST00000555178 FZD9O00144 591 aa13□□□□□ -0.33
TDP1-211ENST00000555178 RNF113AO15541 343 aaKnown RBP13□□□□□ -0.33
TDP1-211ENST00000555178 SALL1Q9NSC2 1324 aa13□□□□□ -0.33
TDP1-211ENST00000555178 DYNLL1P63167 89 aaKnown RBP13□□□□□ -0.33
TDP1-211ENST00000555178 STRIP1Q5VSL9 837 aa13□□□□□ -0.33
TDP1-211ENST00000555178 CASC1Q6TDU7 716 aa13□□□□□ -0.33
TDP1-211ENST00000555178 MIGA1Q8NAN2 632 aa13□□□□□ -0.33
TDP1-211ENST00000555178 WDR66Q8TBY9 1149 aa13□□□□□ -0.33
TDP1-211ENST00000555178 RBM19Q9Y4C8 960 aaKnown RBP13□□□□□ -0.33
TDP1-211ENST00000555178 MAST3O60307 1309 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 ECM29Q5VYK3 1845 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 ZBTB22O15209 634 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 SGSM2O43147 1006 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 VIL1P09327 827 aaKnown RBP12.99□□□□□ -0.33
TDP1-211ENST00000555178 ZMYM1Q5SVZ6 1142 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 ERICH6Q7L0X2 663 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 JDP2Q8WYK2 163 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 GMLQ99445 158 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 VPS33BQ9H267 617 aa12.99□□□□□ -0.33
TDP1-211ENST00000555178 FOXP2O15409 715 aa12.98□□□□□ -0.33
TDP1-211ENST00000555178 EGFRP00533 1210 aa12.98□□□□□ -0.33
TDP1-211ENST00000555178 LDHBP07195 334 aaKnown RBP12.98□□□□□ -0.33
TDP1-211ENST00000555178 TTF1Q15361 905 aaPredicted RBP12.98□□□□□ -0.33
TDP1-211ENST00000555178 VPS53Q5VIR6 699 aa12.98□□□□□ -0.33
TDP1-211ENST00000555178 GJA3Q9Y6H8 435 aa12.98□□□□□ -0.33
TDP1-211ENST00000555178 CYP7A1P22680 504 aa12.98□□□□□ -0.33
TDP1-211ENST00000555178 RSBN1LQ6PCB5 846 aaPredicted RBP12.98□□□□□ -0.33
TDP1-211ENST00000555178 ANO2Q9NQ90 1003 aa12.98□□□□□ -0.33
TDP1-211ENST00000555178 TTF2Q9UNY4 1162 aaKnown RBP12.98□□□□□ -0.33
TDP1-211ENST00000555178 RFX7Q2KHR2 1363 aa12.98□□□□□ -0.33
TDP1-211ENST00000555178 POLR2AP24928 1970 aaKnown RBP12.97□□□□□ -0.33
TDP1-211ENST00000555178 PRKAB2O43741 272 aa12.97□□□□□ -0.33
TDP1-211ENST00000555178 PTH1RQ03431 593 aa12.97□□□□□ -0.33
TDP1-211ENST00000555178 MAP3K12Q12852 859 aa12.97□□□□□ -0.33
TDP1-211ENST00000555178 CIAPIN1Q6FI81 312 aa12.97□□□□□ -0.33
TDP1-211ENST00000555178 LCORLQ8N3X6 602 aa12.97□□□□□ -0.33
TDP1-211ENST00000555178 SMIM22K7EJ46 135 aa12.97□□□□□ -0.33
TDP1-211ENST00000555178 DDNO94850 711 aaPredicted RBP12.97□□□□□ -0.33
TDP1-211ENST00000555178 NAA16Q6N069 864 aaPredicted RBP12.97□□□□□ -0.33
TDP1-211ENST00000555178 ARMT1Q9H993 441 aa12.97□□□□□ -0.33
TDP1-211ENST00000555178 EVX2Q03828 476 aa12.96□□□□□ -0.33
TDP1-211ENST00000555178 GMPSP49915 693 aaPredicted RBP12.96□□□□□ -0.34
TDP1-211ENST00000555178 DZIP1Q86YF9 867 aaKnown RBP12.96□□□□□ -0.34
TDP1-211ENST00000555178 TBC1D22AQ8WUA7 517 aa12.96□□□□□ -0.34
TDP1-211ENST00000555178 APPBP2Q92624 585 aa12.96□□□□□ -0.34
TDP1-211ENST00000555178 TBC1D32Q96NH3 1257 aa12.96□□□□□ -0.34
TDP1-211ENST00000555178 RIOK1Q9BRS2 568 aaKnown RBP12.96□□□□□ -0.34
TDP1-211ENST00000555178 USP26Q9BXU7 913 aa12.96□□□□□ -0.34
TDP1-211ENST00000555178 AATFQ9NY61 560 aaKnown RBP eCLIP12.96□□□□□ -0.34
TDP1-211ENST00000555178 SCAF8Q9UPN6 1271 aaKnown RBP12.96□□□□□ -0.34
TDP1-211ENST00000555178 DAGLAQ9Y4D2 1042 aa12.96□□□□□ -0.34
TDP1-211ENST00000555178 FOCADQ5VW36 1801 aa12.96□□□□□ -0.34
TDP1-211ENST00000555178 HIP1O00291 1037 aa12.95□□□□□ -0.34
TDP1-211ENST00000555178 MBD4O95243 580 aa12.95□□□□□ -0.34
TDP1-211ENST00000555178 UBE3CQ15386 1083 aa12.95□□□□□ -0.34
TDP1-211ENST00000555178 C22orf23Q9BZE7 217 aa12.95□□□□□ -0.34
TDP1-211ENST00000555178 LSG1Q9H089 658 aaKnown RBP12.95□□□□□ -0.34
TDP1-211ENST00000555178 GPAA1O43292 621 aa12.94□□□□□ -0.34
TDP1-211ENST00000555178 GRIN3BO60391 1043 aa12.94□□□□□ -0.34
TDP1-211ENST00000555178 SH3RF3Q8TEJ3 882 aaPredicted RBP12.94□□□□□ -0.34
TDP1-211ENST00000555178 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.94□□□□□ -0.34
TDP1-211ENST00000555178 TAF6LQ9Y6J9 622 aa12.94□□□□□ -0.34
TDP1-211ENST00000555178 MROH7-TTC4A0A0A0MT08 1334 aa12.94□□□□□ -0.34
TDP1-211ENST00000555178 ASTN2O75129 1339 aaPredicted RBP12.94□□□□□ -0.34
TDP1-211ENST00000555178 CACNB3P54284 484 aa12.94□□□□□ -0.34
TDP1-211ENST00000555178 EIF6P56537 245 aaKnown RBP12.94□□□□□ -0.34
TDP1-211ENST00000555178 COL9A3Q14050 684 aaPredicted RBP12.94□□□□□ -0.34
TDP1-211ENST00000555178 MCMDC2Q4G0Z9 681 aa12.94□□□□□ -0.34
TDP1-211ENST00000555178 SPTY2D1Q68D10 685 aaPredicted RBP12.94□□□□□ -0.34
TDP1-211ENST00000555178 RUFY2Q8WXA3 655 aa12.94□□□□□ -0.34
TDP1-211ENST00000555178 PRMT6Q96LA8 375 aaPredicted RBP12.94□□□□□ -0.34
TDP1-211ENST00000555178 STRBPQ96SI9 672 aaKnown RBP12.94□□□□□ -0.34
TDP1-211ENST00000555178 MYH1P12882 1939 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 REC8O95072 547 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 CRKP46108 304 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 FKBP1AP62942 108 aaKnown RBP12.93□□□□□ -0.34
TDP1-211ENST00000555178 APOBEC3HQ6NTF7 200 aaKnown RBP12.93□□□□□ -0.34
TDP1-211ENST00000555178 SAMD7Q7Z3H4 446 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 ZGPATQ8N5A5 531 aaKnown RBP12.93□□□□□ -0.34
TDP1-211ENST00000555178 SDR42E1Q8WUS8 393 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 UPF2Q9HAU5 1272 aaKnown RBP12.93□□□□□ -0.34
TDP1-211ENST00000555178 PALD1Q9ULE6 856 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 GAKO14976 1311 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 CCDC171Q6TFL3 1326 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 RAD50Q92878 1312 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 ZFYP08048 801 aaPredicted RBP12.93□□□□□ -0.34
TDP1-211ENST00000555178 EPS15P42566 896 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 BTDP43251 543 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 RHBDL3P58872 404 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 EPB41L4AQ9HCS5 686 aaPredicted RBP12.93□□□□□ -0.34
TDP1-211ENST00000555178 HELLSQ9NRZ9 838 aa12.93□□□□□ -0.34
TDP1-211ENST00000555178 MAGEB6P1A0A0J9YX57 407 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms