RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 LIG3P49916 1009 aa10.21□□□□□ -0.77
SYNE2-217ENST00000555022 CHMP4BP1P59074 171 aa10.21□□□□□ -0.77
SYNE2-217ENST00000555022 MCMDC2Q4G0Z9 681 aa10.21□□□□□ -0.77
SYNE2-217ENST00000555022 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.21□□□□□ -0.77
SYNE2-217ENST00000555022 CNNM3Q8NE01 707 aa10.21□□□□□ -0.77
SYNE2-217ENST00000555022 CDC42BPGQ6DT37 1551 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 HIP1O00291 1037 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 TEX33O43247 280 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 PFKFB2O60825 505 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 SRLQ86TD4 932 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 GOLGA1Q92805 767 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 SENP2Q9HC62 589 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 INTS13Q9NVM9 706 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 MAPK8IP1Q9UQF2 711 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 NFE2L3Q9Y4A8 694 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 PCDHA5Q9Y5H7 936 aa10.21□□□□□ -0.78
SYNE2-217ENST00000555022 FAM170AA1A519 330 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 PSDA5PKW4 1024 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-217ENST00000555022 EFCAB8A8MWE9 144 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 DNA2P51530 1060 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 MYL5Q02045 173 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 FMR1Q06787 632 aaKnown RBP eCLIP10.2□□□□□ -0.78
SYNE2-217ENST00000555022 TTC31Q49AM3 519 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-217ENST00000555022 TNNI3KQ59H18 835 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 MYSM1Q5VVJ2 828 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 NKX2-3Q8TAU0 364 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 CWC15Q9P013 229 aaKnown RBP10.2□□□□□ -0.78
SYNE2-217ENST00000555022 DBF4Q9UBU7 674 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-217ENST00000555022 U3KPZ7 1027 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-217ENST00000555022 FPGT-TNNI3KV9GXZ4 949 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 FLT4P35916 1363 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 HSP90B2PQ58FF3 399 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 RRP12Q5JTH9 1297 aaKnown RBP10.2□□□□□ -0.78
SYNE2-217ENST00000555022 CCDC158Q5M9N0 1113 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 KSR2Q6VAB6 950 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 TRIM10Q9UDY6 481 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 IGKV5-2P06315 115 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 PDE6BP35913 854 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 VSNL1P62760 191 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 KRT32Q14532 448 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 ANO1Q5XXA6 986 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 NFXL1Q6ZNB6 911 aa10.2□□□□□ -0.78
SYNE2-217ENST00000555022 IGSF1Q8N6C5 1336 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 M0R2C6 588 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 ZSCAN12O43309 604 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 PRC1O43663 620 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 SRGAP2O75044 1071 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 MATR3P43243 847 aaKnown RBP eCLIP10.19□□□□□ -0.78
SYNE2-217ENST00000555022 C1orf141Q5JVX7 400 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 AXDND1Q5T1B0 1012 aaPredicted RBP10.19□□□□□ -0.78
SYNE2-217ENST00000555022 ADALQ6DHV7 355 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 LMBR1LQ6UX01 489 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 NOA1Q8NC60 698 aaKnown RBP10.19□□□□□ -0.78
SYNE2-217ENST00000555022 IL17RAQ96F46 866 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 PSMB7Q99436 277 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 HDAC6Q9UBN7 1215 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 KCNJ14Q9UNX9 436 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 ECM2O94769 699 aaPredicted RBP10.19□□□□□ -0.78
SYNE2-217ENST00000555022 ACTN2P35609 894 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 ZKSCAN3Q9BRR0 538 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 HSD3B7Q9H2F3 369 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 FAM204AQ9H8W3 233 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 HMG20BQ9P0W2 317 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 MED23Q9ULK4 1368 aa10.19□□□□□ -0.78
SYNE2-217ENST00000555022 A0A087WZG4 1122 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 EIF3CLB5ME19 914 aaKnown RBP10.18□□□□□ -0.78
SYNE2-217ENST00000555022 CAVIN2O95810 425 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 NEXNQ0ZGT2 675 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 USP49Q70CQ1 688 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 FOXP4Q8IVH2 680 aaPredicted RBP10.18□□□□□ -0.78
SYNE2-217ENST00000555022 SLC35F6Q8N357 371 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 FBXO18Q8NFZ0 1043 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 EIF3CQ99613 913 aaKnown RBP10.18□□□□□ -0.78
SYNE2-217ENST00000555022 ALG1Q9BT22 464 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 IMPACTQ9P2X3 320 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 NAA16Q6N069 864 aaPredicted RBP10.18□□□□□ -0.78
SYNE2-217ENST00000555022 RALYLQ86SE5 291 aaKnown RBP10.18□□□□□ -0.78
SYNE2-217ENST00000555022 AKAP2Q9Y2D5 859 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 SAMM50Q9Y512 469 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 PHLPP2Q6ZVD8 1323 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 ANKRD26Q9UPS8 1709 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 HSPD1P10809 573 aaKnown RBP10.18□□□□□ -0.78
SYNE2-217ENST00000555022 SHC4Q6S5L8 630 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 VSTM4Q8IW00 320 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 SMARCC2Q8TAQ2 1214 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 KCNB2Q92953 911 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 FAM107BQ9H098 131 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 MRFAP1Q9Y605 127 aa10.18□□□□□ -0.78
SYNE2-217ENST00000555022 ALDH1L1O75891 902 aa10.17□□□□□ -0.78
SYNE2-217ENST00000555022 ERCC3P19447 782 aa10.17□□□□□ -0.78
SYNE2-217ENST00000555022 LRRC24Q50LG9 513 aa10.17□□□□□ -0.78
SYNE2-217ENST00000555022 RAD9BQ6WBX8 426 aa10.17□□□□□ -0.78
SYNE2-217ENST00000555022 GPR161Q8N6U8 529 aaKnown RBP10.17□□□□□ -0.78
SYNE2-217ENST00000555022 SLF1Q9BQI6 1058 aa10.17□□□□□ -0.78
SYNE2-217ENST00000555022 SEC31BQ9NQW1 1179 aa10.17□□□□□ -0.78
SYNE2-217ENST00000555022 GUCA1BQ9UMX6 200 aa10.17□□□□□ -0.78
SYNE2-217ENST00000555022 POLR2DO15514 142 aaKnown RBP10.17□□□□□ -0.78
SYNE2-217ENST00000555022 BMP6P22004 513 aa10.17□□□□□ -0.78
SYNE2-217ENST00000555022 METTL16Q86W50 562 aaKnown RBP10.17□□□□□ -0.78
SYNE2-217ENST00000555022 GOLGA6L1Q8N7Z2 621 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms