RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 RHOXF2BP0C7M4 288 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 PDHBP11177 359 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 ARHGAP25P42331 645 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 FANCCQ00597 558 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 GOLGA8FQ08AF8 430 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 GOLGA8DPQ0D2H9 430 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 CCDC40Q4G0X9 1142 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 LARP1Q6PKG0 1096 aaKnown RBP10.9□□□□□ -0.66
SIX4-202ENST00000554079 B4GALNT4Q76KP1 1039 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 CCAR1Q8IX12 1150 aaKnown RBP10.9□□□□□ -0.66
SIX4-202ENST00000554079 C3orf20Q8ND61 904 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 LMBR1Q8WVP7 490 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 RIN2Q8WYP3 895 aaPredicted RBP10.9□□□□□ -0.66
SIX4-202ENST00000554079 RHOXF2Q9BQY4 288 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 IRX2Q9BZI1 471 aaPredicted RBP10.9□□□□□ -0.66
SIX4-202ENST00000554079 SLC40A1Q9NP59 571 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 MROH2AA6NES4 1674 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 SYCP2Q9BX26 1530 aa10.9□□□□□ -0.67
SIX4-202ENST00000554079 ELL2O00472 640 aaPredicted RBP10.89□□□□□ -0.67
SIX4-202ENST00000554079 KIAA0754O94854 1291 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 ZNF202O95125 648 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 TOGARAM2Q6ZUX3 1019 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 C8orf58Q8NAV2 365 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 CAPS2Q9BXY5 557 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 TM6SF1Q9BZW5 370 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 ZSWIM6Q9HCJ5 1215 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 KIF20BQ96Q89 1820 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 AGPSO00116 658 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 PPFIA2O75334 1257 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 EZRP15311 586 aaKnown RBP10.89□□□□□ -0.67
SIX4-202ENST00000554079 IBSPP21815 317 aaPredicted RBP10.89□□□□□ -0.67
SIX4-202ENST00000554079 SNCBQ16143 134 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 DPCR1Q3MIW9 517 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 ADCK5Q3MIX3 580 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 SPDYE1Q8NFV5 336 aaPredicted RBP10.89□□□□□ -0.67
SIX4-202ENST00000554079 SPDL1Q96EA4 605 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 SAAL1Q96ER3 474 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 HSD3B7Q9H2F3 369 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 RABEP2Q9H5N1 569 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 BATF3Q9NR55 127 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 TPCN1Q9ULQ1 816 aa10.89□□□□□ -0.67
SIX4-202ENST00000554079 AMPHP49418 695 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 GNGT1P63211 74 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 TUBB2AQ13885 445 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 KCNB1Q14721 858 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 CFAP70Q5T0N1 1121 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 ARMC3Q5W041 872 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 VSTM4Q8IW00 320 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 CCDC13Q8IYE1 715 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 DPF2Q92785 391 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 SH3GL2Q99962 352 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 TUBB2BQ9BVA1 445 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 CPSF1Q10570 1443 aaKnown RBP10.88□□□□□ -0.67
SIX4-202ENST00000554079 ARAP3Q8WWN8 1544 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 NEDD4P46934 1319 aa10.88□□□□□ -0.67
SIX4-202ENST00000554079 H7C1W4 665 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 PEX19P40855 299 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 FAM160A1Q05DH4 1040 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 KARSQ15046 597 aaKnown RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 EFCAB2Q5VUJ9 269 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 KIAA1328Q86T90 577 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 FBXW7Q969H0 707 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 JAKMIP1Q96N16 626 aaKnown RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 LRRCC1Q9C099 1032 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 MRPL44Q9H9J2 332 aaKnown RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 SLC39A2Q9NP94 309 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 GOLGA6CA6NDK9 693 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 PFKFB2O60825 505 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 PYGLP06737 847 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 GOLGA6DP0CG33 693 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 ADD1P35611 737 aaKnown RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 GGCXP38435 758 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 TBX2Q13207 712 aaPredicted RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 FILIP1LQ4L180 1135 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 NFXL1Q6ZNB6 911 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 CCDC73Q6ZRK6 1079 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 CEP57Q86XR8 500 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 CCDC50Q8IVM0 306 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 PARP9Q8IXQ6 854 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 RPUSD2Q8IZ73 545 aaKnown RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 TCP11Q8WWU5 503 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 GOLGA6AQ9NYA3 693 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 LMCD1Q9NZU5 365 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 TPX2Q9ULW0 747 aaKnown RBP10.87□□□□□ -0.67
SIX4-202ENST00000554079 PNPLA6Q8IY17 1366 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 TULP4Q9NRJ4 1543 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 TET3O43151 1660 aa10.87□□□□□ -0.67
SIX4-202ENST00000554079 ENO4A6NNW6 628 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 STX10O60499 249 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 MAP4K4O95819 1239 aaPredicted RBP10.86□□□□□ -0.67
SIX4-202ENST00000554079 MAGEA8P43361 318 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 SKOR1P84550 965 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 STIM1Q13586 685 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 PDIA5Q14554 519 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 NOA1Q8NC60 698 aaKnown RBP10.86□□□□□ -0.67
SIX4-202ENST00000554079 COG1Q8WTW3 980 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 RTEL1Q9NZ71 1219 aa10.86□□□□□ -0.67
SIX4-202ENST00000554079 RCOR1Q9UKL0 485 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms