RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 CACNA1FO60840 1977 aa11.14□□□□□ -0.63
TDP1-208ENST00000553989 A0A1B0GUL6 1792 aa11.13□□□□□ -0.63
TDP1-208ENST00000553989 FRAT2O75474 233 aaPredicted RBP11.13□□□□□ -0.63
TDP1-208ENST00000553989 ALDH1L1O75891 902 aa11.13□□□□□ -0.63
TDP1-208ENST00000553989 GYG1P46976 350 aa11.13□□□□□ -0.63
TDP1-208ENST00000553989 RASA3Q14644 834 aa11.13□□□□□ -0.63
TDP1-208ENST00000553989 PRPF38BQ5VTL8 546 aaKnown RBP11.13□□□□□ -0.63
TDP1-208ENST00000553989 ANKRD13AQ8IZ07 590 aa11.13□□□□□ -0.63
TDP1-208ENST00000553989 CFHR5Q9BXR6 569 aa11.13□□□□□ -0.63
TDP1-208ENST00000553989 ECM29Q5VYK3 1845 aa11.13□□□□□ -0.63
TDP1-208ENST00000553989 PDE4DIPQ5VU43 2346 aa11.13□□□□□ -0.63
TDP1-208ENST00000553989 IGF2BP3O00425 579 aaKnown RBP eCLIP11.12□□□□□ -0.63
TDP1-208ENST00000553989 HIBADHP31937 336 aaKnown RBP11.12□□□□□ -0.63
TDP1-208ENST00000553989 CHAF1AQ13111 956 aaPredicted RBP11.12□□□□□ -0.63
TDP1-208ENST00000553989 UBE4AQ14139 1066 aa11.12□□□□□ -0.63
TDP1-208ENST00000553989 FAM9BQ8IZU0 186 aa11.12□□□□□ -0.63
TDP1-208ENST00000553989 ERO1AQ96HE7 468 aa11.12□□□□□ -0.63
TDP1-208ENST00000553989 TDRD3Q9H7E2 651 aaKnown RBP11.12□□□□□ -0.63
TDP1-208ENST00000553989 ELP3Q9H9T3 547 aa11.12□□□□□ -0.63
TDP1-208ENST00000553989 ZNF70Q9UC06 446 aaPredicted RBP11.12□□□□□ -0.63
TDP1-208ENST00000553989 AOX1Q06278 1338 aa11.11□□□□□ -0.63
TDP1-208ENST00000553989 UNCXA6NJT0 531 aa11.11□□□□□ -0.63
TDP1-208ENST00000553989 TCP10L2B9ZVM9 353 aa11.11□□□□□ -0.63
TDP1-208ENST00000553989 TNNI2P48788 182 aa11.11□□□□□ -0.63
TDP1-208ENST00000553989 ERICH6BQ5W0A0 696 aa11.11□□□□□ -0.63
TDP1-208ENST00000553989 OPTNQ96CV9 577 aa11.11□□□□□ -0.63
TDP1-208ENST00000553989 SUCLG2Q96I99 432 aa11.11□□□□□ -0.63
TDP1-208ENST00000553989 SERPINA10Q9UK55 444 aa11.11□□□□□ -0.63
TDP1-208ENST00000553989 IQSEC3Q9UPP2 1182 aaPredicted RBP11.11□□□□□ -0.63
TDP1-208ENST00000553989 FAM205AQ6ZU69 1335 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 MROH5Q6ZUA9 1318 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 USP2O75604 605 aaPredicted RBP11.1□□□□□ -0.63
TDP1-208ENST00000553989 CRKP46108 304 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 CRHR2Q13324 411 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 CAVIN4Q5BKX8 364 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 METTL24Q5JXM2 366 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 OTOP1Q7RTM1 612 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 DZIP1LQ8IYY4 767 aaKnown RBP11.1□□□□□ -0.63
TDP1-208ENST00000553989 TDRD7Q8NHU6 1098 aaKnown RBP11.1□□□□□ -0.63
TDP1-208ENST00000553989 CD99L2Q8TCZ2 262 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 PUS3Q9BZE2 481 aaKnown RBP11.1□□□□□ -0.63
TDP1-208ENST00000553989 CSADQ9Y600 493 aa11.1□□□□□ -0.63
TDP1-208ENST00000553989 NBPF7P0C2Y1 421 aaPredicted RBP11.09□□□□□ -0.63
TDP1-208ENST00000553989 GJA5P36382 358 aa11.09□□□□□ -0.63
TDP1-208ENST00000553989 SPRYD3Q8NCJ5 442 aa11.09□□□□□ -0.63
TDP1-208ENST00000553989 FAM84BQ96KN1 310 aaPredicted RBP11.09□□□□□ -0.63
TDP1-208ENST00000553989 TMEM39BQ9GZU3 492 aa11.09□□□□□ -0.63
TDP1-208ENST00000553989 BICC1Q9H694 974 aaKnown RBP11.09□□□□□ -0.63
TDP1-208ENST00000553989 EFCC1Q9HA90 598 aa11.09□□□□□ -0.63
TDP1-208ENST00000553989 TMOD2Q9NZR1 351 aa11.09□□□□□ -0.63
TDP1-208ENST00000553989 SP3Q02447 781 aa11.08□□□□□ -0.64
TDP1-208ENST00000553989 TAF1CQ15572 869 aaPredicted RBP11.08□□□□□ -0.64
TDP1-208ENST00000553989 INTS3Q68E01 1043 aaKnown RBP11.08□□□□□ -0.64
TDP1-208ENST00000553989 TBC1D22AQ8WUA7 517 aa11.08□□□□□ -0.64
TDP1-208ENST00000553989 TEKT1Q969V4 418 aa11.08□□□□□ -0.64
TDP1-208ENST00000553989 OTUD5Q96G74 571 aa11.08□□□□□ -0.64
TDP1-208ENST00000553989 ARAP2Q8WZ64 1704 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 CCL15-CCL14A0A0B4J2E2 113 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 TNRC18O15417 2968 aaPredicted RBP11.07□□□□□ -0.64
TDP1-208ENST00000553989 WDHD1O75717 1129 aaPredicted RBP11.07□□□□□ -0.64
TDP1-208ENST00000553989 GTF2A2P52657 109 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 CACNB3P54284 484 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 MAP3K9P80192 1104 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 VGLL4Q14135 290 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 CCL15Q16663 113 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 LRRC24Q50LG9 513 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 CDAN1Q8IWY9 1227 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 PTPN18Q99952 460 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 ZFYVE28Q9HCC9 887 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 PCDH10Q9P2E7 1040 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 PTPN22Q9Y2R2 807 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 RIPOR2Q9Y4F9 1068 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 OTOFQ9HC10 1997 aa11.07□□□□□ -0.64
TDP1-208ENST00000553989 POTEFA5A3E0 1075 aa11.06□□□□□ -0.64
TDP1-208ENST00000553989 IFIT1P09914 478 aaKnown RBP11.06□□□□□ -0.64
TDP1-208ENST00000553989 ARHGEF6Q15052 776 aa11.06□□□□□ -0.64
TDP1-208ENST00000553989 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.06□□□□□ -0.64
TDP1-208ENST00000553989 KAZALD1Q96I82 304 aa11.06□□□□□ -0.64
TDP1-208ENST00000553989 TEPSINQ96N21 525 aa11.06□□□□□ -0.64
TDP1-208ENST00000553989 MAST3O60307 1309 aa11.06□□□□□ -0.64
TDP1-208ENST00000553989 TESPA1A2RU30 521 aaPredicted RBP11.05□□□□□ -0.64
TDP1-208ENST00000553989 PDE8BO95263 885 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 BCAMP50895 628 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 PUM3Q15397 648 aaKnown RBP11.05□□□□□ -0.64
TDP1-208ENST00000553989 GRIK5Q16478 980 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 RABL6Q3YEC7 729 aaPredicted RBP11.05□□□□□ -0.64
TDP1-208ENST00000553989 FBXO33Q7Z6M2 555 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.05□□□□□ -0.64
TDP1-208ENST00000553989 KLHDC4Q8TBB5 520 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 BRI3BPQ8WY22 251 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 GCC1Q96CN9 775 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 HOOK2Q96ED9 719 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 WRNIP1Q96S55 665 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 TMEM106CQ9BVX2 250 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 UTYO14607 1347 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 PTPRCP08575 1304 aa11.05□□□□□ -0.64
TDP1-208ENST00000553989 LAMB1P07942 1786 aa11.04□□□□□ -0.64
TDP1-208ENST00000553989 MYCP01106 439 aaPredicted RBP11.04□□□□□ -0.64
TDP1-208ENST00000553989 HDLBPQ00341 1268 aaKnown RBP11.04□□□□□ -0.64
TDP1-208ENST00000553989 KIF22Q14807 665 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms