RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 MKRN3Q13064 507 aaKnown RBP11.84□□□□□ -0.51
TMEM260-204ENST00000553335 TTC22Q5TAA0 569 aa11.84□□□□□ -0.51
TMEM260-204ENST00000553335 TSHZ3Q63HK5 1081 aa11.84□□□□□ -0.51
TMEM260-204ENST00000553335 SPATA5Q8NB90 893 aa11.84□□□□□ -0.51
TMEM260-204ENST00000553335 ZNF784Q8NCA9 323 aaPredicted RBP11.84□□□□□ -0.51
TMEM260-204ENST00000553335 IQSEC3Q9UPP2 1182 aaPredicted RBP11.84□□□□□ -0.51
TMEM260-204ENST00000553335 PDS5AQ29RF7 1337 aaKnown RBP11.84□□□□□ -0.51
TMEM260-204ENST00000553335 RASGRF1Q13972 1273 aa11.83□□□□□ -0.52
TMEM260-204ENST00000553335 TTF1Q15361 905 aaPredicted RBP11.83□□□□□ -0.52
TMEM260-204ENST00000553335 ZGPATQ8N5A5 531 aaKnown RBP11.83□□□□□ -0.52
TMEM260-204ENST00000553335 WDR66Q8TBY9 1149 aa11.83□□□□□ -0.52
TMEM260-204ENST00000553335 DNAJC2Q99543 621 aaKnown RBP11.83□□□□□ -0.52
TMEM260-204ENST00000553335 HAUS7Q99871 368 aa11.83□□□□□ -0.52
TMEM260-204ENST00000553335 HMG20BQ9P0W2 317 aa11.83□□□□□ -0.52
TMEM260-204ENST00000553335 ZNRF3Q9ULT6 936 aa11.83□□□□□ -0.52
TMEM260-204ENST00000553335 ZNF646O15015 1829 aaPredicted RBP11.83□□□□□ -0.52
TMEM260-204ENST00000553335 SCN9AQ15858 1988 aa11.83□□□□□ -0.52
TMEM260-204ENST00000553335 TRIM6-TRIM34B2RNG4 842 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 TIE1P35590 1138 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 ZAP70P43403 619 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 EIF6P56537 245 aaKnown RBP11.82□□□□□ -0.52
TMEM260-204ENST00000553335 GTF2IP78347 998 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 CHAF1AQ13111 956 aaPredicted RBP11.82□□□□□ -0.52
TMEM260-204ENST00000553335 SCARF1Q14162 830 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 TTLL5Q6EMB2 1281 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 SKAP1Q86WV1 359 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 CNTROBQ8N137 903 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 TBC1D22AQ8WUA7 517 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 FBXW7Q969H0 707 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 SNRKQ9NRH2 765 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 PAG1Q9NWQ8 432 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 FAM205AQ6ZU69 1335 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 MAST2Q6P0Q8 1798 aa11.82□□□□□ -0.52
TMEM260-204ENST00000553335 COL4A5P29400 1685 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 USP17L3A6NCW0 530 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 USP17L4A6NCW7 530 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 GOLIM4O00461 696 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 MAP4K4O95819 1239 aaPredicted RBP11.81□□□□□ -0.52
TMEM260-204ENST00000553335 PRELPP51888 382 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 STRIP1Q5VSL9 837 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 SPTY2D1Q68D10 685 aaPredicted RBP11.81□□□□□ -0.52
TMEM260-204ENST00000553335 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.81□□□□□ -0.52
TMEM260-204ENST00000553335 USP17L1Q7RTZ2 530 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 RILPL2Q969X0 211 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 EVI5LQ96CN4 794 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 RNF181Q9P0P0 153 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 SALL1Q9NSC2 1324 aa11.81□□□□□ -0.52
TMEM260-204ENST00000553335 GOLGB1Q14789 3259 aaKnown RBP11.8□□□□□ -0.52
TMEM260-204ENST00000553335 IGSF3O75054 1194 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 CYP2E1P05181 493 aaPredicted RBP11.8□□□□□ -0.52
TMEM260-204ENST00000553335 FKBP1AP62942 108 aaKnown RBP11.8□□□□□ -0.52
TMEM260-204ENST00000553335 TNIP1Q15025 636 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 LRRFIP1Q32MZ4 808 aaKnown RBP11.8□□□□□ -0.52
TMEM260-204ENST00000553335 BMP2KLQ5H9B9 411 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 CIAPIN1Q6FI81 312 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 ZSCAN25Q6NSZ9 544 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 PI16Q6UXB8 463 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 LARP6Q9BRS8 491 aaKnown RBP11.8□□□□□ -0.52
TMEM260-204ENST00000553335 ABCF2Q9UG63 623 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 NDUFB9Q9Y6M9 179 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 COL1A1P02452 1464 aaPredicted RBP11.8□□□□□ -0.52
TMEM260-204ENST00000553335 MYO3BQ8WXR4 1341 aa11.8□□□□□ -0.52
TMEM260-204ENST00000553335 YDJCA8MPS7 323 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 FZD9O00144 591 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 RAD17O75943 681 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 GSPT1P15170 499 aaKnown RBP11.79□□□□□ -0.52
TMEM260-204ENST00000553335 MAP3K12Q12852 859 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 MFSD14BQ5SR56 506 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 C9orf131Q5VYM1 1079 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 ERICH6Q7L0X2 663 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 KBTBD3Q8NAB2 608 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 FSD1Q9BTV5 496 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.79□□□□□ -0.52
TMEM260-204ENST00000553335 LRP2BPQ9P2M1 347 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 JAG2Q9Y219 1238 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 MYH2Q9UKX2 1941 aa11.79□□□□□ -0.52
TMEM260-204ENST00000553335 LDHBP07195 334 aaKnown RBP11.78□□□□□ -0.52
TMEM260-204ENST00000553335 SDSP20132 328 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 CXCL9Q07325 125 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 DACT2Q5SW24 774 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 TICAM2Q86XR7 235 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 CRISPLD2Q9H0B8 497 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 ANTXR1Q9H6X2 564 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 KCNQ5Q9NR82 932 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 RAI14Q9P0K7 980 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 SUGT1Q9Y2Z0 365 aa11.78□□□□□ -0.52
TMEM260-204ENST00000553335 ZC3H4Q9UPT8 1303 aaKnown RBP11.78□□□□□ -0.52
TMEM260-204ENST00000553335 TTLL13PA6NNM8 815 aa11.77□□□□□ -0.53
TMEM260-204ENST00000553335 HIP1O00291 1037 aa11.77□□□□□ -0.53
TMEM260-204ENST00000553335 TULP1O00294 542 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-204ENST00000553335 PSMD14O00487 310 aa11.77□□□□□ -0.53
TMEM260-204ENST00000553335 IDH1O75874 414 aaKnown RBP11.77□□□□□ -0.53
TMEM260-204ENST00000553335 VIL1P09327 827 aaKnown RBP11.77□□□□□ -0.53
TMEM260-204ENST00000553335 MFSD10Q14728 455 aa11.77□□□□□ -0.53
TMEM260-204ENST00000553335 DPY19L2Q6NUT2 758 aa11.77□□□□□ -0.53
TMEM260-204ENST00000553335 RSBN1LQ6PCB5 846 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-204ENST00000553335 TMED8Q6PL24 325 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-204ENST00000553335 TBC1D9Q6ZT07 1266 aa11.77□□□□□ -0.53
TMEM260-204ENST00000553335 SLF2Q8IX21 1173 aa11.77□□□□□ -0.53
TMEM260-204ENST00000553335 AGBL3Q8NEM8 1001 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms