RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 LRRCC1Q9C099 1032 aa17.32■□□□□ 0.36
PTCH1-226ENST00000553011 CRKP46108 304 aa17.31■□□□□ 0.36
PTCH1-226ENST00000553011 RBM5P52756 815 aaKnown RBP eCLIP17.31■□□□□ 0.36
PTCH1-226ENST00000553011 DLK2Q6UY11 383 aa17.31■□□□□ 0.36
PTCH1-226ENST00000553011 USP48Q86UV5 1035 aa17.31■□□□□ 0.36
PTCH1-226ENST00000553011 MTMR14Q8NCE2 650 aa17.31■□□□□ 0.36
PTCH1-226ENST00000553011 DCPSQ96C86 337 aaKnown RBP17.31■□□□□ 0.36
PTCH1-226ENST00000553011 SNRKQ9NRH2 765 aa17.31■□□□□ 0.36
PTCH1-226ENST00000553011 SERPINA10Q9UK55 444 aa17.31■□□□□ 0.36
PTCH1-226ENST00000553011 SCAF8Q9UPN6 1271 aaKnown RBP17.31■□□□□ 0.36
PTCH1-226ENST00000553011 SUGT1Q9Y2Z0 365 aa17.31■□□□□ 0.36
PTCH1-226ENST00000553011 SPDYE2BA6NHP3 402 aa17.3■□□□□ 0.36
PTCH1-226ENST00000553011 ADM5C9JUS6 153 aa17.3■□□□□ 0.36
PTCH1-226ENST00000553011 LDHBP07195 334 aaKnown RBP17.3■□□□□ 0.36
PTCH1-226ENST00000553011 IFIT2P09913 472 aaKnown RBP17.3■□□□□ 0.36
PTCH1-226ENST00000553011 SPDYE6P0CI01 402 aa17.3■□□□□ 0.36
PTCH1-226ENST00000553011 CDC37L1Q7L3B6 337 aa17.3■□□□□ 0.36
PTCH1-226ENST00000553011 KRT26Q7Z3Y9 468 aa17.3■□□□□ 0.36
PTCH1-226ENST00000553011 PRMT6Q96LA8 375 aaPredicted RBP17.3■□□□□ 0.36
PTCH1-226ENST00000553011 ABCF2Q9UG63 623 aa17.3■□□□□ 0.36
PTCH1-226ENST00000553011 MAST3O60307 1309 aa17.29■□□□□ 0.36
PTCH1-226ENST00000553011 APLP1P51693 650 aa17.29■□□□□ 0.36
PTCH1-226ENST00000553011 HTRA3P83110 453 aa17.29■□□□□ 0.36
PTCH1-226ENST00000553011 HDAC1Q13547 482 aaPredicted RBP17.29■□□□□ 0.36
PTCH1-226ENST00000553011 TBC1D9Q6ZT07 1266 aa17.29■□□□□ 0.36
PTCH1-226ENST00000553011 ZGPATQ8N5A5 531 aaKnown RBP17.29■□□□□ 0.36
PTCH1-226ENST00000553011 ZNF512BQ96KM6 892 aaPredicted RBP17.29■□□□□ 0.36
PTCH1-226ENST00000553011 PITPNM2Q9BZ72 1349 aa17.28■□□□□ 0.36
PTCH1-226ENST00000553011 CLRN2A0PK11 232 aa17.28■□□□□ 0.36
PTCH1-226ENST00000553011 HDLBPQ00341 1268 aaKnown RBP17.28■□□□□ 0.36
PTCH1-226ENST00000553011 DIXDC1Q155Q3 683 aa17.28■□□□□ 0.36
PTCH1-226ENST00000553011 SULF1Q8IWU6 871 aa17.28■□□□□ 0.36
PTCH1-226ENST00000553011 TEKT1Q969V4 418 aa17.28■□□□□ 0.36
PTCH1-226ENST00000553011 NDUFB9Q9Y6M9 179 aa17.28■□□□□ 0.36
PTCH1-226ENST00000553011 DOCK2Q92608 1830 aa17.27■□□□□ 0.36
PTCH1-226ENST00000553011 ZAP70P43403 619 aa17.27■□□□□ 0.36
PTCH1-226ENST00000553011 MRIQ9BWK5 157 aa17.27■□□□□ 0.36
PTCH1-226ENST00000553011 MAST2Q6P0Q8 1798 aa17.27■□□□□ 0.35
PTCH1-226ENST00000553011 CYP2E1P05181 493 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-226ENST00000553011 SPTY2D1Q68D10 685 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-226ENST00000553011 HHIPL2Q6UWX4 724 aa17.26■□□□□ 0.35
PTCH1-226ENST00000553011 ERICH6Q7L0X2 663 aa17.26■□□□□ 0.35
PTCH1-226ENST00000553011 ZDHHC15Q96MV8 337 aa17.26■□□□□ 0.35
PTCH1-226ENST00000553011 TDRD3Q9H7E2 651 aaKnown RBP17.26■□□□□ 0.35
PTCH1-226ENST00000553011 DAGLAQ9Y4D2 1042 aa17.26■□□□□ 0.35
PTCH1-226ENST00000553011 MYO1BO43795 1136 aa17.25■□□□□ 0.35
PTCH1-226ENST00000553011 IGHDP01880 384 aa17.25■□□□□ 0.35
PTCH1-226ENST00000553011 SPDYE2Q495Y8 402 aa17.25■□□□□ 0.35
PTCH1-226ENST00000553011 APOBEC3HQ6NTF7 200 aaKnown RBP17.25■□□□□ 0.35
PTCH1-226ENST00000553011 DZIP1Q86YF9 867 aaKnown RBP17.25■□□□□ 0.35
PTCH1-226ENST00000553011 ZNF384Q8TF68 577 aa17.25■□□□□ 0.35
PTCH1-226ENST00000553011 RWDD1Q9H446 243 aaPredicted RBP17.25■□□□□ 0.35
PTCH1-226ENST00000553011 ZNF408Q9H9D4 720 aa17.25■□□□□ 0.35
PTCH1-226ENST00000553011 VEZTQ9HBM0 779 aa17.25■□□□□ 0.35
PTCH1-226ENST00000553011 ZNF70Q9UC06 446 aaPredicted RBP17.25■□□□□ 0.35
PTCH1-226ENST00000553011 AK9Q5TCS8 1911 aa17.24■□□□□ 0.35
PTCH1-226ENST00000553011 CELF2O95319 508 aaKnown RBP17.24■□□□□ 0.35
PTCH1-226ENST00000553011 MECOMQ03112 1051 aa17.24■□□□□ 0.35
PTCH1-226ENST00000553011 PRAMEF18Q5VWM3 479 aa17.24■□□□□ 0.35
PTCH1-226ENST00000553011 CST9Q5W186 159 aa17.24■□□□□ 0.35
PTCH1-226ENST00000553011 APOBEC3FQ8IUX4 373 aaKnown RBP17.24■□□□□ 0.35
PTCH1-226ENST00000553011 GCC1Q96CN9 775 aa17.24■□□□□ 0.35
PTCH1-226ENST00000553011 CDCA5Q96FF9 252 aa17.24■□□□□ 0.35
PTCH1-226ENST00000553011 PIH1D3Q9NQM4 214 aaKnown RBP17.24■□□□□ 0.35
PTCH1-226ENST00000553011 RAI14Q9P0K7 980 aa17.24■□□□□ 0.35
PTCH1-226ENST00000553011 LRP2BPQ9P2M1 347 aa17.24■□□□□ 0.35
PTCH1-226ENST00000553011 MYH7P12883 1935 aa17.23■□□□□ 0.35
PTCH1-226ENST00000553011 TMEM88BA6NKF7 163 aa17.23■□□□□ 0.35
PTCH1-226ENST00000553011 ANKRD45Q5TZF3 282 aa17.23■□□□□ 0.35
PTCH1-226ENST00000553011 NSUN4Q96CB9 384 aaKnown RBP17.23■□□□□ 0.35
PTCH1-226ENST00000553011 ANTXR1Q9H6X2 564 aa17.23■□□□□ 0.35
PTCH1-226ENST00000553011 CREBZFQ9NS37 354 aa17.23■□□□□ 0.35
PTCH1-226ENST00000553011 GAKO14976 1311 aa17.22■□□□□ 0.35
PTCH1-226ENST00000553011 ATP5JP18859 108 aa17.22■□□□□ 0.35
PTCH1-226ENST00000553011 CACNB3P54284 484 aa17.22■□□□□ 0.35
PTCH1-226ENST00000553011 SMC5Q8IY18 1101 aa17.22■□□□□ 0.35
PTCH1-226ENST00000553011 OTUD7AQ8TE49 926 aaPredicted RBP17.22■□□□□ 0.35
PTCH1-226ENST00000553011 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.22■□□□□ 0.35
PTCH1-226ENST00000553011 BOLA2Q9H3K6 86 aa17.22■□□□□ 0.35
PTCH1-226ENST00000553011 CEP350Q5VT06 3117 aa17.21■□□□□ 0.35
PTCH1-226ENST00000553011 CDK5RAP2Q96SN8 1893 aa17.21■□□□□ 0.35
PTCH1-226ENST00000553011 TCP10L2B9ZVM9 353 aa17.21■□□□□ 0.35
PTCH1-226ENST00000553011 TSHZ3Q63HK5 1081 aa17.21■□□□□ 0.35
PTCH1-226ENST00000553011 EDC3Q96F86 508 aaKnown RBP17.21■□□□□ 0.35
PTCH1-226ENST00000553011 DNAJC2Q99543 621 aaKnown RBP17.21■□□□□ 0.35
PTCH1-226ENST00000553011 DEFB129Q9H1M3 183 aa17.21■□□□□ 0.35
PTCH1-226ENST00000553011 MROH7-TTC4A0A0A0MT08 1334 aa17.21■□□□□ 0.34
PTCH1-226ENST00000553011 B4GALNT3Q6L9W6 998 aa17.2■□□□□ 0.34
PTCH1-226ENST00000553011 CDC42EP5Q6NZY7 148 aa17.2■□□□□ 0.34
PTCH1-226ENST00000553011 SLF2Q8IX21 1173 aa17.2■□□□□ 0.34
PTCH1-226ENST00000553011 FAM163AQ96GL9 167 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-226ENST00000553011 ECHDC1Q9NTX5 307 aa17.2■□□□□ 0.34
PTCH1-226ENST00000553011 GOLIM4O00461 696 aa17.19■□□□□ 0.34
PTCH1-226ENST00000553011 IDH1O75874 414 aaKnown RBP17.19■□□□□ 0.34
PTCH1-226ENST00000553011 BTDP43251 543 aa17.19■□□□□ 0.34
PTCH1-226ENST00000553011 GSTO1P78417 241 aa17.19■□□□□ 0.34
PTCH1-226ENST00000553011 RASA3Q14644 834 aa17.19■□□□□ 0.34
PTCH1-226ENST00000553011 NAA16Q6N069 864 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-226ENST00000553011 USP40Q9NVE5 1235 aa17.19■□□□□ 0.34
PTCH1-226ENST00000553011 TMOD2Q9NZR1 351 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms