RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 NEURL1BA8MQ27 555 aa9.76□□□□□ -0.85
NEK3-201ENST00000550331 SLC10A3P09131 477 aa9.76□□□□□ -0.85
NEK3-201ENST00000550331 USP17L8P0C7I0 530 aa9.76□□□□□ -0.85
NEK3-201ENST00000550331 CSRNP1Q96S65 589 aa9.76□□□□□ -0.85
NEK3-201ENST00000550331 GMLQ99445 158 aa9.76□□□□□ -0.85
NEK3-201ENST00000550331 GREM2Q9H772 168 aa9.76□□□□□ -0.85
NEK3-201ENST00000550331 BSDC1Q9NW68 430 aaPredicted RBP9.76□□□□□ -0.85
NEK3-201ENST00000550331 PITPNM2Q9BZ72 1349 aa9.76□□□□□ -0.85
NEK3-201ENST00000550331 USP17L3A6NCW0 530 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 USP17L4A6NCW7 530 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 H7C1W4 665 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 CWF19L2Q2TBE0 894 aaKnown RBP9.75□□□□□ -0.85
NEK3-201ENST00000550331 CCDC184Q52MB2 194 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 USP17L1Q7RTZ2 530 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 CDCA5Q96FF9 252 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 HDAC9Q9UKV0 1011 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 MINPP1Q9UNW1 487 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 MYO3BQ8WXR4 1341 aa9.75□□□□□ -0.85
NEK3-201ENST00000550331 MMP14P50281 582 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 CCT4P50991 539 aaKnown RBP9.74□□□□□ -0.85
NEK3-201ENST00000550331 FKBP1BP68106 108 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 SCARF1Q14162 830 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 GCKRQ14397 625 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 PROX2Q3B8N5 592 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 ANGEL2Q5VTE6 544 aaKnown RBP9.74□□□□□ -0.85
NEK3-201ENST00000550331 G2E3Q7L622 706 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 GCC1Q96CN9 775 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 PLA2G12BQ9BX93 195 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 COA1Q9GZY4 146 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 MYH16Q9H6N6 1097 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 MYOZ2Q9NPC6 264 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 TSR3Q9UJK0 312 aaKnown RBP9.74□□□□□ -0.85
NEK3-201ENST00000550331 LEMD3Q9Y2U8 911 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 ASTN2O75129 1339 aaPredicted RBP9.74□□□□□ -0.85
NEK3-201ENST00000550331 FANCIQ9NVI1 1328 aa9.74□□□□□ -0.85
NEK3-201ENST00000550331 LOC100996750A0A140TA64 210 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 IGHMBP2P38935 993 aaKnown RBP9.73□□□□□ -0.85
NEK3-201ENST00000550331 FLIIQ13045 1269 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 PKN2Q16513 984 aaKnown RBP9.73□□□□□ -0.85
NEK3-201ENST00000550331 DACT2Q5SW24 774 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 STRIP1Q5VSL9 837 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 UBE3BQ7Z3V4 1068 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 RASAL3Q86YV0 1011 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 LINS1Q8NG48 757 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 DNAAF4Q8WXU2 420 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 KRTAP4-6Q9BYQ5 205 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 ANKRD2Q9GZV1 360 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 SCN9AQ15858 1988 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 PAPPA2Q9BXP8 1791 aa9.73□□□□□ -0.85
NEK3-201ENST00000550331 WTIPA6NIX2 430 aaPredicted RBP9.72□□□□□ -0.85
NEK3-201ENST00000550331 CSF1RP07333 972 aa9.72□□□□□ -0.85
NEK3-201ENST00000550331 ITGA6P23229 1130 aa9.72□□□□□ -0.85
NEK3-201ENST00000550331 CASP7P55210 303 aa9.72□□□□□ -0.85
NEK3-201ENST00000550331 FKBP5Q13451 457 aaPredicted RBP9.72□□□□□ -0.85
NEK3-201ENST00000550331 WDR63Q8IWG1 891 aa9.72□□□□□ -0.85
NEK3-201ENST00000550331 OGFOD1Q8N543 542 aa9.72□□□□□ -0.85
NEK3-201ENST00000550331 ZNF296Q8WUU4 475 aaPredicted RBP9.72□□□□□ -0.85
NEK3-201ENST00000550331 MPHOSPH8Q99549 860 aa9.72□□□□□ -0.85
NEK3-201ENST00000550331 MRS2Q9HD23 443 aa9.72□□□□□ -0.85
NEK3-201ENST00000550331 TBC1D8O95759 1140 aa9.71□□□□□ -0.86
NEK3-201ENST00000550331 HABP4Q5JVS0 413 aaKnown RBP9.71□□□□□ -0.86
NEK3-201ENST00000550331 ZNF804BA4D1E1 1349 aa9.71□□□□□ -0.86
NEK3-201ENST00000550331 PSME4Q14997 1843 aa9.7□□□□□ -0.86
NEK3-201ENST00000550331 WNT10BO00744 389 aa9.7□□□□□ -0.86
NEK3-201ENST00000550331 VAMP4O75379 141 aa9.7□□□□□ -0.86
NEK3-201ENST00000550331 NBPF9Q3BBW0 867 aa9.7□□□□□ -0.86
NEK3-201ENST00000550331 TREML4Q6UXN2 200 aa9.7□□□□□ -0.86
NEK3-201ENST00000550331 TXNRD3Q86VQ6 643 aa9.7□□□□□ -0.86
NEK3-201ENST00000550331 ANKRD18BA2A2Z9 1011 aa9.69□□□□□ -0.86
NEK3-201ENST00000550331 ANP32CO43423 234 aa9.69□□□□□ -0.86
NEK3-201ENST00000550331 KLRK1P26718 216 aa9.69□□□□□ -0.86
NEK3-201ENST00000550331 KCNJ4P48050 445 aa9.69□□□□□ -0.86
NEK3-201ENST00000550331 EXOSC9Q06265 439 aaKnown RBP9.69□□□□□ -0.86
NEK3-201ENST00000550331 CHRNDQ07001 517 aa9.69□□□□□ -0.86
NEK3-201ENST00000550331 LCE2AQ5TA79 106 aaPredicted RBP9.69□□□□□ -0.86
NEK3-201ENST00000550331 TTLL5Q6EMB2 1281 aa9.69□□□□□ -0.86
NEK3-201ENST00000550331 FBXO46Q6PJ61 603 aaPredicted RBP9.69□□□□□ -0.86
NEK3-201ENST00000550331 C15orf52Q6ZUT6 534 aaKnown RBP9.69□□□□□ -0.86
NEK3-201ENST00000550331 FBXW7Q969H0 707 aa9.69□□□□□ -0.86
NEK3-201ENST00000550331 MXD3Q9BW11 206 aa9.69□□□□□ -0.86
NEK3-201ENST00000550331 KIAA0100Q14667 2235 aaKnown RBP9.68□□□□□ -0.86
NEK3-201ENST00000550331 COL1A1P02452 1464 aaPredicted RBP9.68□□□□□ -0.86
NEK3-201ENST00000550331 SASH1O94885 1247 aa9.68□□□□□ -0.86
NEK3-201ENST00000550331 NF2P35240 595 aa9.68□□□□□ -0.86
NEK3-201ENST00000550331 FOXO4P98177 505 aa9.68□□□□□ -0.86
NEK3-201ENST00000550331 IFIT5Q13325 482 aaKnown RBP9.68□□□□□ -0.86
NEK3-201ENST00000550331 BEND3Q5T5X7 828 aa9.68□□□□□ -0.86
NEK3-201ENST00000550331 PPP1R18Q6NYC8 613 aa9.68□□□□□ -0.86
NEK3-201ENST00000550331 MOB2Q70IA6 237 aa9.68□□□□□ -0.86
NEK3-201ENST00000550331 APOBEC3FQ8IUX4 373 aaKnown RBP9.68□□□□□ -0.86
NEK3-201ENST00000550331 CD209Q9NNX6 404 aa9.68□□□□□ -0.86
NEK3-201ENST00000550331 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.68□□□□□ -0.86
NEK3-201ENST00000550331 ZNF646O15015 1829 aaPredicted RBP9.68□□□□□ -0.86
NEK3-201ENST00000550331 MKI67P46013 3256 aaKnown RBP9.67□□□□□ -0.86
NEK3-201ENST00000550331 IRS2Q9Y4H2 1338 aa9.67□□□□□ -0.86
NEK3-201ENST00000550331 UBE2Q2LH0YL09 131 aa9.67□□□□□ -0.86
NEK3-201ENST00000550331 GPR25O00155 361 aa9.67□□□□□ -0.86
NEK3-201ENST00000550331 ZEB1P37275 1124 aaPredicted RBP9.67□□□□□ -0.86
NEK3-201ENST00000550331 GTF2IP78347 998 aa9.67□□□□□ -0.86
NEK3-201ENST00000550331 TTLL12Q14166 644 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms