RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NGEFQ8N5V2 710 aa8.71□□□□□ -1.02
LIMA1-204ENST00000549064 VPS9D1Q9Y2B5 631 aa8.71□□□□□ -1.02
LIMA1-204ENST00000549064 UBN2Q6ZU65 1347 aa8.71□□□□□ -1.02
LIMA1-204ENST00000549064 BRCA2P51587 3418 aa8.71□□□□□ -1.02
LIMA1-204ENST00000549064 CEMIPQ8WUJ3 1361 aa8.71□□□□□ -1.02
LIMA1-204ENST00000549064 SZT2Q5T011 3432 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 DUOX1Q9NRD9 1551 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 H7C1D1 291 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 PIK3CDO00329 1044 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 DIAPH1O60610 1272 aaKnown RBP8.7□□□□□ -1.02
LIMA1-204ENST00000549064 SNRPA1P09661 255 aaKnown RBP8.7□□□□□ -1.02
LIMA1-204ENST00000549064 FBXO45P0C2W1 286 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 NR1H3Q13133 447 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 PKN2Q16513 984 aaKnown RBP8.7□□□□□ -1.02
LIMA1-204ENST00000549064 SUSD4Q5VX71 490 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 LYPD8Q6UX82 237 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 RASAL3Q86YV0 1011 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 NYXQ9GZU5 481 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 ATP6V0A2Q9Y487 856 aa8.7□□□□□ -1.02
LIMA1-204ENST00000549064 RBBP6Q7Z6E9 1792 aaKnown RBP8.69□□□□□ -1.02
LIMA1-204ENST00000549064 KIAA2012Q0VF49 1180 aa8.69□□□□□ -1.02
LIMA1-204ENST00000549064 TNIP1Q15025 636 aa8.69□□□□□ -1.02
LIMA1-204ENST00000549064 DESI1Q6ICB0 168 aa8.69□□□□□ -1.02
LIMA1-204ENST00000549064 FBXO46Q6PJ61 603 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-204ENST00000549064 RNF19BQ6ZMZ0 732 aa8.69□□□□□ -1.02
LIMA1-204ENST00000549064 GAS2L2Q8NHY3 880 aa8.69□□□□□ -1.02
LIMA1-204ENST00000549064 RTFDC1Q9BY42 306 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-204ENST00000549064 VPS33BQ9H267 617 aa8.69□□□□□ -1.02
LIMA1-204ENST00000549064 ABCC4O15439 1325 aa8.69□□□□□ -1.02
LIMA1-204ENST00000549064 ASTN2O75129 1339 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-204ENST00000549064 GPR25O00155 361 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 PSMD14O00487 310 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 DLL1O00548 723 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 U2SURPO15042 1029 aaKnown RBP8.68□□□□□ -1.02
LIMA1-204ENST00000549064 NTSR2O95665 410 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 Q3C1V9 767 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 BLOC1S3Q6QNY0 202 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 DPP8Q6V1X1 898 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-204ENST00000549064 TTLL7Q6ZT98 887 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 LAPTM4BQ86VI4 370 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 MPNDQ8N594 471 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 SUPT20HQ8NEM7 779 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 DCPSQ96C86 337 aaKnown RBP8.68□□□□□ -1.02
LIMA1-204ENST00000549064 ZFRQ96KR1 1074 aaKnown RBP8.68□□□□□ -1.02
LIMA1-204ENST00000549064 COL3A1P02461 1466 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-204ENST00000549064 ANKRD36CQ5JPF3 1778 aa8.68□□□□□ -1.02
LIMA1-204ENST00000549064 ACTN4O43707 911 aaKnown RBP8.67□□□□□ -1.02
LIMA1-204ENST00000549064 KIAA0100Q14667 2235 aaKnown RBP8.67□□□□□ -1.02
LIMA1-204ENST00000549064 SCN9AQ15858 1988 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 MAP3K15Q6ZN16 1313 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 MOB2Q70IA6 237 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 CDCA5Q96FF9 252 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 PHACTR3Q96KR7 559 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 NBPF3Q9H094 633 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 TMX4Q9H1E5 349 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-204ENST00000549064 R3HDMLQ9H3Y0 253 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 GGA3Q9NZ52 723 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 IBTKQ9P2D0 1353 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-204ENST00000549064 KNSTRNQ9Y448 316 aa8.67□□□□□ -1.02
LIMA1-204ENST00000549064 TRIOBPQ9H2D6 2365 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 LRRC37AA6NMS7 1700 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 DDX60Q8IY21 1712 aaKnown RBP8.66□□□□□ -1.02
LIMA1-204ENST00000549064 ZBBXA8MT70 800 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 ERVV-1B6SEH8 477 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 CCDC27Q2M243 656 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 KIF4BQ2VIQ3 1234 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 SND1Q7KZF4 910 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMA1-204ENST00000549064 MCM10Q7L590 875 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 STK32AQ8WU08 396 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 DPF2Q92785 391 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 DBNDD1Q9H9R9 158 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 KCNQ5Q9NR82 932 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 FKBPLQ9UIM3 349 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 COL6A3P12111 3177 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 HTTP42858 3142 aa8.66□□□□□ -1.02
LIMA1-204ENST00000549064 SKIP12755 728 aa8.65□□□□□ -1.02
LIMA1-204ENST00000549064 DCTN1Q14203 1278 aa8.65□□□□□ -1.02
LIMA1-204ENST00000549064 TMEM164Q5U3C3 297 aa8.65□□□□□ -1.02
LIMA1-204ENST00000549064 SP8Q8IXZ3 490 aa8.65□□□□□ -1.02
LIMA1-204ENST00000549064 ZNF34Q8IZ26 560 aa8.65□□□□□ -1.02
LIMA1-204ENST00000549064 NLRP3Q96P20 1036 aa8.65□□□□□ -1.02
LIMA1-204ENST00000549064 MAP10Q9P2G4 905 aa8.65□□□□□ -1.02
LIMA1-204ENST00000549064 ZMIZ1Q9ULJ6 1067 aa8.65□□□□□ -1.02
LIMA1-204ENST00000549064 SCAF8Q9UPN6 1271 aaKnown RBP8.65□□□□□ -1.02
LIMA1-204ENST00000549064 RRP7AQ9Y3A4 280 aaKnown RBP8.65□□□□□ -1.02
LIMA1-204ENST00000549064 COL4A1P02462 1669 aa8.65□□□□□ -1.03
LIMA1-204ENST00000549064 RTL9Q8NET4 1388 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 KDM3BQ7LBC6 1761 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 USP17L3A6NCW0 530 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 USP17L4A6NCW7 530 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 BHMG1C9JSJ3 638 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-204ENST00000549064 UBE2Q2LH0YL09 131 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 FKTNO75072 461 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 MYL6BP14649 208 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 EN2P19622 333 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-204ENST00000549064 PRKAR2BP31323 418 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 USP17L2Q6R6M4 530 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 KIF6Q6ZMV9 814 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 USP17L1Q7RTZ2 530 aa8.64□□□□□ -1.03
LIMA1-204ENST00000549064 DEPDC4Q8N2C3 294 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms