RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 PHAXQ9H814 394 aaKnown RBP16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 ECHDC1Q9NTX5 307 aa16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 USP54Q70EL1 1684 aa16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 SETD1BQ9UPS6 1966 aaKnown RBP16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 PATL2C9JE40 543 aaKnown RBP16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 ARHGAP6O43182 974 aa16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 ERLIN1O75477 346 aa16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 VSNL1P62760 191 aa16.45■□□□□ 0.22
RAPGEF3-216ENST00000547856 A0A0U1RQJ8 604 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 CPP00450 1065 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 POLA2Q14181 598 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 DHX8Q14562 1220 aaKnown RBP16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 SRGAP1Q7Z6B7 1085 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 TMEM139Q8IV31 216 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 ATRIPQ8WXE1 791 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 LRRIQ3A6PVS8 624 aaPredicted RBP16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 CUTAO60888 179 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 IBSPP21815 317 aaPredicted RBP16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 MTF1Q14872 753 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 C14orf37Q86TY3 774 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 ZNF396Q96N95 335 aaPredicted RBP16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 HSD3B7Q9H2F3 369 aa16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 PA2G4Q9UQ80 394 aaKnown RBP16.44■□□□□ 0.22
RAPGEF3-216ENST00000547856 NLRP12P59046 1061 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 ZNF589Q86UQ0 364 aaPredicted RBP16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 FAM71BQ8TC56 605 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 EVI5LQ96CN4 794 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 PHF8Q9UPP1 1060 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 LRRC37A3O60309 1634 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 GNAT3A8MTJ3 354 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 EXOC5O00471 708 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 RNF40O75150 1001 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 CCT5P48643 541 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 AACSQ86V21 672 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 IL17REQ8NFR9 667 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 FSD1Q9BTV5 496 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 CARD10Q9BWT7 1032 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 MRPL44Q9H9J2 332 aaKnown RBP16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 FANCLQ9NW38 375 aa16.43■□□□□ 0.22
RAPGEF3-216ENST00000547856 VSTM4Q8IW00 320 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 USHBP1Q8N6Y0 703 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 HNRNPLLQ8WVV9 542 aaKnown RBP16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 RIN2Q8WYP3 895 aaPredicted RBP16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 GDAP1L1Q96MZ0 367 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 BOLA2Q9H3K6 86 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 NCOA5Q9HCD5 579 aaKnown RBP16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 LTN1O94822 1766 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 POLR3DP05423 398 aaPredicted RBP16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 OTUD7BQ6GQQ9 843 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 ANKLE2Q86XL3 938 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 BPIFA3Q9BQP9 254 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 JPH2Q9BR39 696 aaPredicted RBP16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 CCDC8Q9H0W5 538 aaPredicted RBP16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 RAI14Q9P0K7 980 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 SCP2P22307 547 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 EIF5P55010 431 aaKnown RBP16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 KCNV1Q6PIU1 500 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 AFAP1L1Q8TED9 768 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 CLIC4Q9Y696 253 aa16.42■□□□□ 0.22
RAPGEF3-216ENST00000547856 PTPDC1A2A3K4 754 aa16.41■□□□□ 0.22
RAPGEF3-216ENST00000547856 STK38Q15208 465 aa16.41■□□□□ 0.22
RAPGEF3-216ENST00000547856 ILDR1Q86SU0 546 aaPredicted RBP16.41■□□□□ 0.22
RAPGEF3-216ENST00000547856 NEK1Q96PY6 1258 aa16.41■□□□□ 0.22
RAPGEF3-216ENST00000547856 MAP3K5Q99683 1374 aa16.41■□□□□ 0.22
RAPGEF3-216ENST00000547856 ZNF202O95125 648 aa16.41■□□□□ 0.22
RAPGEF3-216ENST00000547856 CBFA2T2O43439 604 aa16.4■□□□□ 0.22
RAPGEF3-216ENST00000547856 FCHSD1Q86WN1 690 aa16.4■□□□□ 0.22
RAPGEF3-216ENST00000547856 EDC3Q96F86 508 aaKnown RBP16.4■□□□□ 0.22
RAPGEF3-216ENST00000547856 GPATCH3Q96I76 525 aa16.4■□□□□ 0.22
RAPGEF3-216ENST00000547856 KIF4BQ2VIQ3 1234 aa16.4■□□□□ 0.22
RAPGEF3-216ENST00000547856 ADALQ6DHV7 355 aa16.4■□□□□ 0.22
RAPGEF3-216ENST00000547856 EHD4Q9H223 541 aa16.4■□□□□ 0.22
RAPGEF3-216ENST00000547856 FAM169AQ9Y6X4 670 aa16.4■□□□□ 0.22
RAPGEF3-216ENST00000547856 NPHP4O75161 1426 aaPredicted RBP16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 USP5P45974 858 aa16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 NSUN7Q8NE18 718 aaKnown RBP16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 MED4Q9NPJ6 270 aa16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 RAB21Q9UL25 225 aa16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 GOLGA6L9A6NEM1 432 aa16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 CTDNEP1O95476 244 aa16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 CHGBP05060 677 aa16.39■□□□□ 0.21
RAPGEF3-216ENST00000547856 FAM208AQ9UK61 1670 aaKnown RBP16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 NEDD4P46934 1319 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 CCDC196A0A1B0GTZ2 297 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 EIF2S2P20042 333 aaKnown RBP16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 PPP2R5AQ15172 486 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 ZNF569Q5MCW4 686 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 INTS13Q9NVM9 706 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 SOWAHDA6NJG2 315 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 TAF7Q15545 349 aaPredicted RBP16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 ESCO1Q5FWF5 840 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 NAA16Q6N069 864 aaPredicted RBP16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 CEP112Q8N8E3 955 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 IGSF22Q8N9C0 903 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 TLR7Q9NYK1 1049 aaKnown RBP16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 CDC23Q9UJX2 597 aa16.38■□□□□ 0.21
RAPGEF3-216ENST00000547856 KIF1CO43896 1103 aaKnown RBP16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 SYF2O95926 243 aaKnown RBP16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 MYL5Q02045 173 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms