RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-204ENST00000547637 TMOD2Q9NZR1 351 aa28.95■■■□□ 2.22
SMARCD1-204ENST00000547637 TRIM17Q9Y577 477 aa28.95■■■□□ 2.22
SMARCD1-204ENST00000547637 SSC5DA1L4H1 1573 aa28.95■■■□□ 2.22
SMARCD1-204ENST00000547637 TCP10L2B9ZVM9 353 aa28.94■■■□□ 2.22
SMARCD1-204ENST00000547637 IFIT1P09914 478 aaKnown RBP28.94■■■□□ 2.22
SMARCD1-204ENST00000547637 TEKT1Q969V4 418 aa28.94■■■□□ 2.22
SMARCD1-204ENST00000547637 ZNF521Q96K83 1311 aa28.94■■■□□ 2.22
SMARCD1-204ENST00000547637 IGF2BP3O00425 579 aaKnown RBP eCLIP28.93■■■□□ 2.22
SMARCD1-204ENST00000547637 LRRC24Q50LG9 513 aa28.93■■■□□ 2.22
SMARCD1-204ENST00000547637 HOOK2Q96ED9 719 aa28.93■■■□□ 2.22
SMARCD1-204ENST00000547637 IQSEC3Q9UPP2 1182 aaPredicted RBP28.93■■■□□ 2.22
SMARCD1-204ENST00000547637 CSADQ9Y600 493 aa28.93■■■□□ 2.22
SMARCD1-204ENST00000547637 MAST3O60307 1309 aa28.93■■■□□ 2.22
SMARCD1-204ENST00000547637 OPTNQ96CV9 577 aa28.92■■■□□ 2.22
SMARCD1-204ENST00000547637 MRIQ9BWK5 157 aa28.92■■■□□ 2.22
SMARCD1-204ENST00000547637 ELP3Q9H9T3 547 aa28.92■■■□□ 2.22
SMARCD1-204ENST00000547637 AOX1Q06278 1338 aa28.92■■■□□ 2.22
SMARCD1-204ENST00000547637 WDHD1O75717 1129 aaPredicted RBP28.91■■■□□ 2.22
SMARCD1-204ENST00000547637 MAP3K9P80192 1104 aa28.91■■■□□ 2.22
SMARCD1-204ENST00000547637 ARHGEF6Q15052 776 aa28.91■■■□□ 2.22
SMARCD1-204ENST00000547637 INTS3Q68E01 1043 aaKnown RBP28.91■■■□□ 2.22
SMARCD1-204ENST00000547637 SUGT1Q9Y2Z0 365 aa28.91■■■□□ 2.22
SMARCD1-204ENST00000547637 PUM3Q15397 648 aaKnown RBP28.9■■■□□ 2.22
SMARCD1-204ENST00000547637 ANKRD44Q8N8A2 993 aa28.9■■■□□ 2.22
SMARCD1-204ENST00000547637 TESPA1A2RU30 521 aaPredicted RBP28.89■■■□□ 2.22
SMARCD1-204ENST00000547637 OTOP1Q7RTM1 612 aa28.89■■■□□ 2.22
SMARCD1-204ENST00000547637 TMEM39BQ9GZU3 492 aa28.89■■■□□ 2.22
SMARCD1-204ENST00000547637 GTF2A2P52657 109 aa28.88■■■□□ 2.21
SMARCD1-204ENST00000547637 CRHR2Q13324 411 aa28.88■■■□□ 2.21
SMARCD1-204ENST00000547637 PRPF38BQ5VTL8 546 aaKnown RBP28.88■■■□□ 2.21
SMARCD1-204ENST00000547637 SSH1Q8WYL5 1049 aa28.88■■■□□ 2.21
SMARCD1-204ENST00000547637 TEPSINQ96N21 525 aa28.88■■■□□ 2.21
SMARCD1-204ENST00000547637 USP44Q9H0E7 712 aa28.88■■■□□ 2.21
SMARCD1-204ENST00000547637 KIF16BQ96L93 1317 aa28.88■■■□□ 2.21
SMARCD1-204ENST00000547637 GJA5P36382 358 aa28.87■■■□□ 2.21
SMARCD1-204ENST00000547637 BCAMP50895 628 aa28.87■■■□□ 2.21
SMARCD1-204ENST00000547637 SP3Q02447 781 aa28.87■■■□□ 2.21
SMARCD1-204ENST00000547637 ALDH1L2Q3SY69 923 aa28.87■■■□□ 2.21
SMARCD1-204ENST00000547637 VGLL2Q8N8G2 317 aa28.87■■■□□ 2.21
SMARCD1-204ENST00000547637 HDAC5Q9UQL6 1122 aa28.87■■■□□ 2.21
SMARCD1-204ENST00000547637 ARAP2Q8WZ64 1704 aa28.86■■■□□ 2.21
SMARCD1-204ENST00000547637 SLC5A1P13866 664 aa28.86■■■□□ 2.21
SMARCD1-204ENST00000547637 ZDHHC15Q96MV8 337 aa28.86■■■□□ 2.21
SMARCD1-204ENST00000547637 EFCC1Q9HA90 598 aa28.86■■■□□ 2.21
SMARCD1-204ENST00000547637 LAMB1P07942 1786 aa28.85■■■□□ 2.21
SMARCD1-204ENST00000547637 FKBP1CQ5VVH2 108 aa28.85■■■□□ 2.21
SMARCD1-204ENST00000547637 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.85■■■□□ 2.21
SMARCD1-204ENST00000547637 FAM83AQ86UY5 434 aa28.85■■■□□ 2.21
SMARCD1-204ENST00000547637 KLHDC4Q8TBB5 520 aa28.85■■■□□ 2.21
SMARCD1-204ENST00000547637 WDR66Q8TBY9 1149 aa28.85■■■□□ 2.21
SMARCD1-204ENST00000547637 ZFYVE28Q9HCC9 887 aa28.85■■■□□ 2.21
SMARCD1-204ENST00000547637 EYA2O00167 538 aa28.84■■■□□ 2.21
SMARCD1-204ENST00000547637 VGLL4Q14135 290 aa28.84■■■□□ 2.21
SMARCD1-204ENST00000547637 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.84■■■□□ 2.21
SMARCD1-204ENST00000547637 PTPN18Q99952 460 aa28.84■■■□□ 2.21
SMARCD1-204ENST00000547637 CCL15-CCL14A0A0B4J2E2 113 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 SLFN5Q08AF3 891 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 TAF1CQ15572 869 aaPredicted RBP28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 CCL15Q16663 113 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 DCAF15Q66K64 600 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 HHIPL2Q6UWX4 724 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 CD99L2Q8TCZ2 262 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 LPIN2Q92539 896 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 MS4A4AQ96JQ5 239 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 SMC4Q9NTJ3 1288 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 PTPN22Q9Y2R2 807 aa28.83■■■□□ 2.21
SMARCD1-204ENST00000547637 GRIK5Q16478 980 aa28.82■■■□□ 2.2
SMARCD1-204ENST00000547637 OTUD5Q96G74 571 aa28.82■■■□□ 2.2
SMARCD1-204ENST00000547637 FBXO3Q9UK99 471 aa28.82■■■□□ 2.2
SMARCD1-204ENST00000547637 FGFR2P21802 821 aa28.81■■■□□ 2.2
SMARCD1-204ENST00000547637 GNL3LQ9NVN8 582 aaKnown RBP28.81■■■□□ 2.2
SMARCD1-204ENST00000547637 UBTFL1P0CB47 393 aaPredicted RBP28.8■■■□□ 2.2
SMARCD1-204ENST00000547637 CETPP11597 493 aa28.8■■■□□ 2.2
SMARCD1-204ENST00000547637 ERO1BQ86YB8 467 aa28.8■■■□□ 2.2
SMARCD1-204ENST00000547637 CACNB3P54284 484 aa28.79■■■□□ 2.2
SMARCD1-204ENST00000547637 CDAN1Q8IWY9 1227 aa28.79■■■□□ 2.2
SMARCD1-204ENST00000547637 BRI3BPQ8WY22 251 aa28.79■■■□□ 2.2
SMARCD1-204ENST00000547637 WRNIP1Q96S55 665 aa28.79■■■□□ 2.2
SMARCD1-204ENST00000547637 CEP126Q9P2H0 1117 aa28.79■■■□□ 2.2
SMARCD1-204ENST00000547637 SPDYE5A6NIY4 337 aa28.78■■■□□ 2.2
SMARCD1-204ENST00000547637 APOBEC3HQ6NTF7 200 aaKnown RBP28.78■■■□□ 2.2
SMARCD1-204ENST00000547637 OTOFQ9HC10 1997 aa28.78■■■□□ 2.2
SMARCD1-204ENST00000547637 CT47B1P0C2W7 299 aaPredicted RBP28.77■■■□□ 2.2
SMARCD1-204ENST00000547637 KIF22Q14807 665 aa28.77■■■□□ 2.2
SMARCD1-204ENST00000547637 NBPF11Q86T75 865 aa28.77■■■□□ 2.2
SMARCD1-204ENST00000547637 ZNF341Q9BYN7 854 aa28.77■■■□□ 2.2
SMARCD1-204ENST00000547637 ZCCHC17Q9NP64 241 aaKnown RBP28.77■■■□□ 2.2
SMARCD1-204ENST00000547637 SNAPC2Q13487 334 aa28.76■■■□□ 2.19
SMARCD1-204ENST00000547637 CNKSR2Q8WXI2 1034 aa28.76■■■□□ 2.19
SMARCD1-204ENST00000547637 CIAO1O76071 339 aa28.75■■■□□ 2.19
SMARCD1-204ENST00000547637 RFX5P48382 616 aaPredicted RBP28.75■■■□□ 2.19
SMARCD1-204ENST00000547637 TMEM106CQ9BVX2 250 aa28.75■■■□□ 2.19
SMARCD1-204ENST00000547637 PCDH10Q9P2E7 1040 aa28.75■■■□□ 2.19
SMARCD1-204ENST00000547637 TNRC18O15417 2968 aaPredicted RBP28.74■■■□□ 2.19
SMARCD1-204ENST00000547637 ATP2B3Q16720 1220 aa28.74■■■□□ 2.19
SMARCD1-204ENST00000547637 FAM151AQ8WW52 585 aa28.74■■■□□ 2.19
SMARCD1-204ENST00000547637 API5Q9BZZ5 524 aaKnown RBP28.74■■■□□ 2.19
SMARCD1-204ENST00000547637 RPAP1Q9BWH6 1393 aaPredicted RBP28.74■■■□□ 2.19
SMARCD1-204ENST00000547637 LDHBP07195 334 aaKnown RBP28.73■■■□□ 2.19
SMARCD1-204ENST00000547637 ARMC5Q96C12 935 aa28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms