RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 GRM8O00222 908 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 DDB1Q16531 1140 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
CDH3-203ENST00000542274 NBPF14Q5TI25 921 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 CCDC186Q7Z3E2 898 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 LRP10Q7Z4F1 713 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 NBPF15Q8N660 670 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 ZNF397Q8NF99 534 aaPredicted RBP12.85□□□□□ -0.35
CDH3-203ENST00000542274 STAP2Q9UGK3 403 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 TBC1D2BQ9UPU7 963 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 TNS2Q63HR2 1409 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 PRIM1P49642 420 aaKnown RBP12.85□□□□□ -0.35
CDH3-203ENST00000542274 KMT5BQ4FZB7 885 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 LINS1Q8NG48 757 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 GIMAP7Q8NHV1 300 aa12.85□□□□□ -0.35
CDH3-203ENST00000542274 ZNF330Q9Y3S2 320 aaPredicted RBP12.85□□□□□ -0.35
CDH3-203ENST00000542274 PKP1Q13835 747 aa12.84□□□□□ -0.35
CDH3-203ENST00000542274 TUBGCP6Q96RT7 1819 aa12.84□□□□□ -0.35
CDH3-203ENST00000542274 ZGPATQ8N5A5 531 aaKnown RBP12.84□□□□□ -0.35
CDH3-203ENST00000542274 FBXO18Q8NFZ0 1043 aa12.84□□□□□ -0.35
CDH3-203ENST00000542274 CEP126Q9P2H0 1117 aa12.84□□□□□ -0.35
CDH3-203ENST00000542274 EME2A4GXA9 379 aaPredicted RBP12.83□□□□□ -0.35
CDH3-203ENST00000542274 NEURL1BA8MQ27 555 aa12.83□□□□□ -0.35
CDH3-203ENST00000542274 CCNHP51946 323 aaPredicted RBP12.83□□□□□ -0.35
CDH3-203ENST00000542274 MARCH10Q8NA82 808 aaPredicted RBP12.83□□□□□ -0.35
CDH3-203ENST00000542274 RNF214Q8ND24 703 aa12.83□□□□□ -0.35
CDH3-203ENST00000542274 MMTAG2Q9BU76 263 aaKnown RBP12.83□□□□□ -0.35
CDH3-203ENST00000542274 TLR7Q9NYK1 1049 aaKnown RBP12.83□□□□□ -0.35
CDH3-203ENST00000542274 AK9Q5TCS8 1911 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 ALDH1L1O75891 902 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 MNAT1P51948 309 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 SLC5A9Q2M3M2 681 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 ZSCAN23Q3MJ62 389 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 HHATQ5VTY9 493 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 DNAJC10Q8IXB1 793 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 TEX11Q8IYF3 940 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 DRAXINQ8NBI3 349 aaPredicted RBP12.83□□□□□ -0.36
CDH3-203ENST00000542274 SPATS2LQ9NUQ6 558 aaKnown RBP12.83□□□□□ -0.36
CDH3-203ENST00000542274 BCL9LQ86UU0 1499 aa12.83□□□□□ -0.36
CDH3-203ENST00000542274 RAB11FIP3O75154 756 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 SASH1O94885 1247 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 DDX58O95786 925 aaKnown RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 PDCD2Q16342 344 aaPredicted RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 C16orf87Q6PH81 154 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 TTLL7Q6ZT98 887 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 GTF3C6Q969F1 213 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 CHAMP1Q96JM3 812 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 CRACR2AQ9BSW2 395 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 TRIM6Q9C030 488 aaPredicted RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 CCDC8Q9H0W5 538 aaPredicted RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 G3BP2Q9UN86 482 aaKnown RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 AFDNP55196 1824 aaKnown RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 PYGLP06737 847 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 GRIK3Q13003 919 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 PUS10Q3MIT2 529 aaKnown RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 ANKRD13DQ6ZTN6 518 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 FAM163AQ96GL9 167 aaPredicted RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 UPF3BQ9BZI7 483 aaKnown RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 ARFGEF2Q9Y6D5 1785 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 TMCO5BA8MYB1 307 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 CDKL5O76039 1030 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 MTX1Q13505 466 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 KCNV1Q6PIU1 500 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 GOLGA5Q8TBA6 731 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 TMX4Q9H1E5 349 aaPredicted RBP12.82□□□□□ -0.36
CDH3-203ENST00000542274 LMCD1Q9NZU5 365 aa12.82□□□□□ -0.36
CDH3-203ENST00000542274 EIF3CLB5ME19 914 aaKnown RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 DTNBO60941 627 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 NEK4P51957 841 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 GCKRQ14397 625 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 RBBP5Q15291 538 aaKnown RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 MEX3CQ5U5Q3 659 aaKnown RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 CCDC34Q96HJ3 373 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 SLC4A9Q96Q91 983 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 EIF3CQ99613 913 aaKnown RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 TACO1Q9BSH4 297 aaKnown RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 TTC12Q9H892 705 aaPredicted RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 BCL9O00512 1426 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 SNX1Q13596 522 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 FAM182BQ5T319 152 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 CWC27Q6UX04 472 aaKnown RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 UBE3BQ7Z3V4 1068 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 AACSQ86V21 672 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 SMARCE1Q969G3 411 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 EAF2Q96CJ1 260 aaPredicted RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 USP21Q9UK80 565 aa12.81□□□□□ -0.36
CDH3-203ENST00000542274 THRAP3Q9Y2W1 955 aaKnown RBP12.81□□□□□ -0.36
CDH3-203ENST00000542274 ST5P78524 1137 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 CAVIN1Q6NZI2 390 aaKnown RBP12.8□□□□□ -0.36
CDH3-203ENST00000542274 HELBQ8NG08 1087 aaPredicted RBP12.8□□□□□ -0.36
CDH3-203ENST00000542274 METTL22Q9BUU2 404 aaPredicted RBP12.8□□□□□ -0.36
CDH3-203ENST00000542274 ZBTB3Q9H5J0 574 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 SNUPNO95149 360 aaKnown RBP12.8□□□□□ -0.36
CDH3-203ENST00000542274 IMPDH2P12268 514 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 ELF1P32519 619 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 GPS2Q13227 327 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 RAB3GAP1Q15042 981 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 CCDC178Q5BJE1 867 aa12.8□□□□□ -0.36
CDH3-203ENST00000542274 EFCAB13Q8IY85 973 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms