RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 UBR3Q6ZT12 1888 aa20.19■□□□□ 0.82
SPIDR-227ENST00000541342 WASHC4Q2M389 1173 aa20.19■□□□□ 0.82
SPIDR-227ENST00000541342 DOCK2Q92608 1830 aa20.19■□□□□ 0.82
SPIDR-227ENST00000541342 UQCRFS1P1P0C7P4 283 aa20.19■□□□□ 0.82
SPIDR-227ENST00000541342 CCDC192P0DO97 292 aa20.19■□□□□ 0.82
SPIDR-227ENST00000541342 GTF2E1P29083 439 aaPredicted RBP20.19■□□□□ 0.82
SPIDR-227ENST00000541342 LRRFIP1Q32MZ4 808 aaKnown RBP20.19■□□□□ 0.82
SPIDR-227ENST00000541342 CCDC24Q8N4L8 307 aa20.19■□□□□ 0.82
SPIDR-227ENST00000541342 KRT32Q14532 448 aa20.18■□□□□ 0.82
SPIDR-227ENST00000541342 CAMK4Q16566 473 aa20.18■□□□□ 0.82
SPIDR-227ENST00000541342 NBPF5PQ86XG9 351 aaPredicted RBP20.18■□□□□ 0.82
SPIDR-227ENST00000541342 APPBP2Q92624 585 aa20.18■□□□□ 0.82
SPIDR-227ENST00000541342 NYXQ9GZU5 481 aa20.18■□□□□ 0.82
SPIDR-227ENST00000541342 ALDH8A1Q9H2A2 487 aaPredicted RBP20.18■□□□□ 0.82
SPIDR-227ENST00000541342 KRT85P78386 507 aa20.18■□□□□ 0.82
SPIDR-227ENST00000541342 NEK1Q96PY6 1258 aa20.18■□□□□ 0.82
SPIDR-227ENST00000541342 RASGRF1Q13972 1273 aa20.17■□□□□ 0.82
SPIDR-227ENST00000541342 SPC24Q8NBT2 197 aa20.17■□□□□ 0.82
SPIDR-227ENST00000541342 WTIPA6NIX2 430 aaPredicted RBP20.17■□□□□ 0.82
SPIDR-227ENST00000541342 ADD2P35612 726 aa20.17■□□□□ 0.82
SPIDR-227ENST00000541342 TRAPPC3LQ5T215 181 aa20.17■□□□□ 0.82
SPIDR-227ENST00000541342 ANKRD18AQ8IVF6 992 aa20.17■□□□□ 0.82
SPIDR-227ENST00000541342 CELF1Q92879 486 aaKnown RBP20.17■□□□□ 0.82
SPIDR-227ENST00000541342 TNRC6CQ9HCJ0 1690 aaKnown RBP20.17■□□□□ 0.82
SPIDR-227ENST00000541342 RFC4P35249 363 aa20.17■□□□□ 0.82
SPIDR-227ENST00000541342 BCAMP50895 628 aa20.17■□□□□ 0.82
SPIDR-227ENST00000541342 TTF1Q15361 905 aaPredicted RBP20.17■□□□□ 0.82
SPIDR-227ENST00000541342 KRT27Q7Z3Y8 459 aa20.17■□□□□ 0.82
SPIDR-227ENST00000541342 SPATA5Q8NB90 893 aa20.16■□□□□ 0.82
SPIDR-227ENST00000541342 FAM200AQ8TCP9 573 aa20.16■□□□□ 0.82
SPIDR-227ENST00000541342 TYRO3Q06418 890 aa20.16■□□□□ 0.82
SPIDR-227ENST00000541342 SLC9C2Q5TAH2 1124 aa20.16■□□□□ 0.82
SPIDR-227ENST00000541342 TTLL5Q6EMB2 1281 aa20.16■□□□□ 0.82
SPIDR-227ENST00000541342 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.16■□□□□ 0.821e-6■■■■□ 22.4
SPIDR-227ENST00000541342 BSDC1Q9NW68 430 aaPredicted RBP20.16■□□□□ 0.82
SPIDR-227ENST00000541342 MAP3K11Q16584 847 aa20.15■□□□□ 0.82
SPIDR-227ENST00000541342 LUZP1Q86V48 1076 aa20.15■□□□□ 0.82
SPIDR-227ENST00000541342 NUP62CLQ9H1M0 184 aa20.15■□□□□ 0.82
SPIDR-227ENST00000541342 WWC3Q9ULE0 1092 aa20.15■□□□□ 0.82
SPIDR-227ENST00000541342 IDH1O75874 414 aaKnown RBP20.15■□□□□ 0.82
SPIDR-227ENST00000541342 TRIM37O94972 964 aa20.15■□□□□ 0.82
SPIDR-227ENST00000541342 DACT1Q9NYF0 836 aa20.15■□□□□ 0.82
SPIDR-227ENST00000541342 TPTE2Q6XPS3 522 aa20.14■□□□□ 0.82
SPIDR-227ENST00000541342 GPAA1O43292 621 aa20.14■□□□□ 0.81
SPIDR-227ENST00000541342 RBM43Q6ZSC3 357 aaKnown RBP20.14■□□□□ 0.81
SPIDR-227ENST00000541342 CKAP2LQ8IYA6 745 aa20.14■□□□□ 0.81
SPIDR-227ENST00000541342 TFIP11Q9UBB9 837 aaKnown RBP20.14■□□□□ 0.81
SPIDR-227ENST00000541342 MINPP1Q9UNW1 487 aa20.14■□□□□ 0.81
SPIDR-227ENST00000541342 TCRBV5S4A2TA0A5A2 114 aa20.14■□□□□ 0.81
SPIDR-227ENST00000541342 NLRP3Q96P20 1036 aa20.14■□□□□ 0.81
SPIDR-227ENST00000541342 PDCP20941 246 aa20.13■□□□□ 0.81
SPIDR-227ENST00000541342 STK3Q13188 491 aa20.13■□□□□ 0.81
SPIDR-227ENST00000541342 ANKRD1Q15327 319 aa20.13■□□□□ 0.81
SPIDR-227ENST00000541342 LEO1Q8WVC0 666 aaPredicted RBP20.13■□□□□ 0.81
SPIDR-227ENST00000541342 ZNF532Q9HCE3 1301 aa20.13■□□□□ 0.81
SPIDR-227ENST00000541342 PDE6AP16499 860 aa20.13■□□□□ 0.81
SPIDR-227ENST00000541342 ZSCAN25Q6NSZ9 544 aa20.13■□□□□ 0.81
SPIDR-227ENST00000541342 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.12■□□□□ 0.81
SPIDR-227ENST00000541342 E7EWF7 191 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 UBE3CQ15386 1083 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 JAK2O60674 1132 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 PTGS1P23219 599 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 NFIXQ14938 502 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 PGBD1Q96JS3 809 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 CCDC94Q9BW85 323 aaPredicted RBP20.12■□□□□ 0.81
SPIDR-227ENST00000541342 CBX8Q9HC52 389 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 FGAP02671 866 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 Q6ZUG5 572 aa20.12■□□□□ 0.81
SPIDR-227ENST00000541342 TM4SF1P30408 202 aa20.11■□□□□ 0.81
SPIDR-227ENST00000541342 ANO6Q4KMQ2 910 aa20.11■□□□□ 0.81
SPIDR-227ENST00000541342 SPATA32Q96LK8 384 aa20.11■□□□□ 0.81
SPIDR-227ENST00000541342 LRRC2Q9BYS8 371 aa20.11■□□□□ 0.81
SPIDR-227ENST00000541342 PDIA4P13667 645 aaKnown RBP20.11■□□□□ 0.81
SPIDR-227ENST00000541342 NR1I2O75469 434 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 SCAND2PQ9GZW5 306 aaPredicted RBP20.1■□□□□ 0.81
SPIDR-227ENST00000541342 TNMDQ9H2S6 317 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 PRDM4Q9UKN5 801 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 KIF3AQ9Y496 699 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 CARMIL3Q8ND23 1372 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 ADRA2BP18089 450 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 ZNF804BA4D1E1 1349 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 MYH15Q9Y2K3 1946 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 GYG1P46976 350 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 RPS8P62241 208 aaKnown RBP20.1■□□□□ 0.81
SPIDR-227ENST00000541342 SLC27A3Q5K4L6 730 aa20.1■□□□□ 0.81
SPIDR-227ENST00000541342 EXOSC10Q01780 885 aaKnown RBP20.09■□□□□ 0.81
SPIDR-227ENST00000541342 UBE4AQ14139 1066 aa20.09■□□□□ 0.81
SPIDR-227ENST00000541342 GTF3C6Q969F1 213 aa20.09■□□□□ 0.81
SPIDR-227ENST00000541342 CLSTN2Q9H4D0 955 aa20.09■□□□□ 0.81
SPIDR-227ENST00000541342 IQSEC3Q9UPP2 1182 aaPredicted RBP20.09■□□□□ 0.81
SPIDR-227ENST00000541342 COL1A1P02452 1464 aaPredicted RBP20.09■□□□□ 0.81
SPIDR-227ENST00000541342 TPM3P06753 285 aa20.09■□□□□ 0.81
SPIDR-227ENST00000541342 HAND2P61296 217 aa20.09■□□□□ 0.81
SPIDR-227ENST00000541342 DHX32Q7L7V1 743 aaKnown RBP20.09■□□□□ 0.81
SPIDR-227ENST00000541342 PROM2Q8N271 834 aa20.09■□□□□ 0.81
SPIDR-227ENST00000541342 HMGB1P09429 215 aaKnown RBP20.09■□□□□ 0.81
SPIDR-227ENST00000541342 MAGEB6Q8N7X4 407 aa20.09■□□□□ 0.81
SPIDR-227ENST00000541342 NRBP1Q9UHY1 535 aa20.09■□□□□ 0.81
SPIDR-227ENST00000541342 RIOK3O14730 519 aaKnown RBP20.08■□□□□ 0.81
SPIDR-227ENST00000541342 CTNNA3Q9UI47 895 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms