RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 PDE4BQ07343 736 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 SYCP1Q15431 976 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 CFAP100Q494V2 611 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 TRMT44Q8IYL2 757 aaKnown RBP12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 GRAMD1CQ8IYS0 662 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 CMTR1Q8N1G2 835 aaKnown RBP12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 OSBPL5Q9H0X9 879 aaPredicted RBP12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 ZCCHC17Q9NP64 241 aaKnown RBP12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 PODXL2Q9NZ53 605 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 CAVIN2O95810 425 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 CABP4P57796 275 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 KIF23Q02241 960 aaPredicted RBP12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 ANO1Q5XXA6 986 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 SYNE3Q6ZMZ3 975 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 ZSWIM4Q9H7M6 989 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 HELLSQ9NRZ9 838 aa12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 SIPA1L3O60292 1781 aaPredicted RBP12.01□□□□□ -0.49
CDC42SE1-207ENST00000540998 A0A0U1RQJ8 604 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 SERPINC1P01008 464 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 ATP2B1P20020 1258 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 SHC4Q6S5L8 630 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 FOXP4Q8IVH2 680 aaPredicted RBP12□□□□□ -0.49
CDC42SE1-207ENST00000540998 ATRIPQ8WXE1 791 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 ZNF274Q96GC6 653 aaPredicted RBP12□□□□□ -0.49
CDC42SE1-207ENST00000540998 CARD6Q9BX69 1037 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 FANCLQ9NW38 375 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 NEMFO60524 1076 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 GYS2P54840 703 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 FAM89AQ96GI7 184 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 DESI2Q9BSY9 194 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 NBPF3Q9H094 633 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12□□□□□ -0.49
CDC42SE1-207ENST00000540998 FHOD1Q9Y613 1164 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 SNAP23O00161 211 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 EYA2O00167 538 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 COBLO75128 1261 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 TFRCP02786 760 aaKnown RBP12□□□□□ -0.49
CDC42SE1-207ENST00000540998 UBASH3AP57075 661 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 CYB5R4Q7L1T6 521 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 PDILTQ8N807 584 aa12□□□□□ -0.49
CDC42SE1-207ENST00000540998 IRX2Q9BZI1 471 aaPredicted RBP12□□□□□ -0.49
CDC42SE1-207ENST00000540998 ABCC6O95255 1503 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 APPP05067 770 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 BMP6P22004 513 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 NLRP12P59046 1061 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 TTC39AQ5SRH9 613 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 TBC1D10CQ8IV04 446 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 PLBD2Q8NHP8 589 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 XAGE2Q96GT9 111 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 CCDC34Q96HJ3 373 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 INTS13Q9NVM9 706 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 SYKP43405 635 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 ADKP55263 362 aaKnown RBP11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 GSDMDP57764 484 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 LONRF3Q496Y0 759 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 VPS37DQ86XT2 251 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 MB21D2Q8IYB1 491 aaPredicted RBP11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 IFNL2Q8IZJ0 200 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 WDR24Q96S15 920 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 CWC25Q9NXE8 425 aaPredicted RBP11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 NWD2Q9ULI1 1742 aa11.99□□□□□ -0.49
CDC42SE1-207ENST00000540998 B4E1Z4 1266 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 H7C1W4 665 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 GPAA1O43292 621 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 ALG1Q9BT22 464 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 VGLL3A8MV65 326 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 PNMA6AP0CW24 399 aaPredicted RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 H2AFXP16104 143 aaPredicted RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 PLA2G4AP47712 749 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 GABPB1Q06547 395 aaPredicted RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 GNL2Q13823 731 aaKnown RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 KARSQ15046 597 aaKnown RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 IMMTQ16891 758 aaKnown RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 CCDC93Q567U6 631 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 TRIM65Q6PJ69 517 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 RALYLQ86SE5 291 aaKnown RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 KLHL34Q8N239 644 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 KCNG4Q8TDN1 519 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 ZFP91Q96JP5 570 aaPredicted RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 A0A1W2PQ27 194 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 A0A1W2PQ64 194 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 A0A1W2PQD8 194 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 CASP1P29466 404 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 MTF1Q14872 753 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 METTL16Q86W50 562 aaKnown RBP11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 NEK11Q8NG66 645 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 L2HGDHQ9H9P8 463 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 POLR3EQ9NVU0 708 aa11.98□□□□□ -0.49
CDC42SE1-207ENST00000540998 ARFGEF2Q9Y6D5 1785 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 USP54Q70EL1 1684 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 PRR29P0C7W0 189 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 GPTP24298 496 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 GUCY1A2P33402 732 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 IL15P40933 162 aaPredicted RBP11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 KRT40Q6A162 431 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 TOGARAM2Q6ZUX3 1019 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 ZKSCAN3Q9BRR0 538 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 SEC31BQ9NQW1 1179 aa11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 ETF1P62495 437 aaKnown RBP11.97□□□□□ -0.49
CDC42SE1-207ENST00000540998 ANKLE2Q86XL3 938 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms