RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	GADD45B	O75293	160 aa	Predicted RBP	9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	MAP3K7CL	P57077	242 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	NBPF9	Q3BBW0	867 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	ATP2A3	Q93084	1043 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	SYNC	Q9H7C4	482 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	ACTN4	O43707	911 aa	Known RBP	9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	MX2	P20592	715 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	SSRP1	Q08945	709 aa	Known RBP	9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	ST13P4	Q8IZP2	240 aa	Predicted RBP	9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	ORC3	Q9UBD5	711 aa	Predicted RBP	9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	FLOT1	O75955	427 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	TMEM132A	Q24JP5	1023 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	CCDC144CP	Q8IYA2	1237 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	PRDM4	Q9UKN5	801 aa		9.81	□□□□□ -0.84
YBX3-208	ENST00000540447	GYS2	P54840	703 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	AMPD3	Q01432	767 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	APBA1	Q02410	837 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	RBM26	Q5T8P6	1007 aa	Known RBP	9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	NBPF10	Q6P3W6	841 aa	Known RBP	9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	IWS1	Q96ST2	819 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	CTNNA1	P35221	906 aa	Known RBP	9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	EPSTI1	Q96J88	318 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	FGD4	Q96M96	766 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	MMRN2	Q9H8L6	949 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	BATF3	Q9NR55	127 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	GSTA5	Q7RTV2	222 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	MAP7D3	Q8IWC1	876 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	MGARP	Q8TDB4	240 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	KLHL29	Q96CT2	875 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	ECM2	O94769	699 aa	Predicted RBP	9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	FCHSD2	O94868	740 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	HHAT	Q5VTY9	493 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	CFAP61	Q8NHU2	1237 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	CTTNBP2NL	Q9P2B4	639 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	BCAP29	Q9UHQ4	241 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	TSC22D4	Q9Y3Q8	395 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	EIF4G1	Q04637	1599 aa	Known RBP	9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	NBPF7	P0C2Y1	421 aa	Predicted RBP	9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	POLD1	P28340	1107 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	CYP2C19	P33261	490 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	HSPA1L	P34931	641 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	TRIM14	Q14142	442 aa		9.8	□□□□□ -0.84
YBX3-208	ENST00000540447	SPTLC2	O15270	562 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	GFAP	P14136	432 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	SKOR1	P84550	965 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	GPRASP1	Q5JY77	1395 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	MAP3K7	O43318	606 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	STX2	P32856	288 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	APOBR	Q0VD83	1088 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	SLC4A8	Q2Y0W8	1093 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	GGT6	Q6P531	493 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	NME8	Q8N427	588 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	PRPF31	Q8WWY3	499 aa	Known RBP	9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	OSBPL9	Q96SU4	736 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	UBA5	Q9GZZ9	404 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	SAR1B	Q9Y6B6	198 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	RAPGEF2	Q9Y4G8	1499 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	CCDC151	A5D8V7	595 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	PSD	A5PKW4	1024 aa	Predicted RBP	9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	RGS16	O15492	202 aa	Predicted RBP	9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	SUN1	O94901	812 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	GUCY2F	P51841	1108 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	STX17	P56962	302 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	FAM133B	Q5BKY9	247 aa	Known RBP	9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	ARHGAP18	Q8N392	663 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	FAM167B	Q9BTA0	163 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	TTC41P	Q6P2S7	1318 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	EEF2	P13639	858 aa	Known RBP	9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	MARCKS	P29966	332 aa	Predicted RBP	9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	TMTC1	Q8IUR5	882 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	ESYT1	Q9BSJ8	1104 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	ARHGAP42	A6NI28	874 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	KCTD16	Q68DU8	428 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	SRGAP1	Q7Z6B7	1085 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	NEK1	Q96PY6	1258 aa		9.79	□□□□□ -0.84
YBX3-208	ENST00000540447	RNASE9	P60153	205 aa	Known RBP	9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	NAIF1	Q69YI7	327 aa	Predicted RBP	9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	PARP9	Q8IXQ6	854 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	ACRBP	Q8NEB7	543 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	CCDC68	Q9H2F9	335 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	CUX2	O14529	1486 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	EVI5	O60447	810 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	TROVE2	P10155	538 aa	Known RBP eCLIP	9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	FKBP4	Q02790	459 aa	Known RBP eCLIP	9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	DENND2C	Q68D51	928 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	ANKRD42	Q8N9B4	389 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	FAM210A	Q96ND0	272 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	HOMER3	Q9NSC5	361 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	PSMA7	O14818	248 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	ESRRG	P62508	458 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	MFSD4B	Q5TF39	518 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	EXOC1	Q9NV70	894 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	HMG20B	Q9P0W2	317 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	PPP2R2C	Q9Y2T4	447 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	DAAM1	Q9Y4D1	1078 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	HMGB1P1	B2RPK0	211 aa	Predicted RBP	9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	SEPT2	Q15019	361 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	SLFNL1	Q499Z3	407 aa		9.78	□□□□□ -0.84
YBX3-208	ENST00000540447	CFAP221	Q4G0U5	840 aa		9.78	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms