RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 MINPP1Q9UNW1 487 aa11.92□□□□□ -0.5
USP28-205ENST00000537706 PDHXO00330 501 aa11.92□□□□□ -0.5
USP28-205ENST00000537706 PER1O15534 1290 aaPredicted RBP11.92□□□□□ -0.5
USP28-205ENST00000537706 CTGFP29279 349 aa11.92□□□□□ -0.5
USP28-205ENST00000537706 NFE2L2Q16236 605 aa11.92□□□□□ -0.5
USP28-205ENST00000537706 PRMT6Q96LA8 375 aaPredicted RBP11.92□□□□□ -0.5
USP28-205ENST00000537706 HTTP42858 3142 aa11.91□□□□□ -0.5
USP28-205ENST00000537706 PCCAP05165 728 aaPredicted RBP11.91□□□□□ -0.5
USP28-205ENST00000537706 IGHMBP2P38935 993 aaKnown RBP11.91□□□□□ -0.5
USP28-205ENST00000537706 FKBP1AP62942 108 aaKnown RBP11.91□□□□□ -0.5
USP28-205ENST00000537706 MAP3K12Q12852 859 aa11.91□□□□□ -0.5
USP28-205ENST00000537706 DIS3LQ8TF46 1054 aaKnown RBP11.91□□□□□ -0.5
USP28-205ENST00000537706 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.91□□□□□ -0.5
USP28-205ENST00000537706 COL4A1P02462 1669 aa11.91□□□□□ -0.5
USP28-205ENST00000537706 FOSL2P15408 326 aa11.9□□□□□ -0.5
USP28-205ENST00000537706 GOLGA2Q08379 1002 aa11.9□□□□□ -0.5
USP28-205ENST00000537706 IRF5Q13568 498 aa11.9□□□□□ -0.5
USP28-205ENST00000537706 RIC3Q7Z5B4 369 aa11.9□□□□□ -0.5
USP28-205ENST00000537706 TAOK2Q9UL54 1235 aa11.9□□□□□ -0.5
USP28-205ENST00000537706 MAPK8IP3Q9UPT6 1336 aa11.9□□□□□ -0.5
USP28-205ENST00000537706 TNPO2O14787 897 aaKnown RBP11.9□□□□□ -0.51
USP28-205ENST00000537706 IRF6O14896 467 aa11.9□□□□□ -0.51
USP28-205ENST00000537706 ELNP15502 786 aa11.9□□□□□ -0.51
USP28-205ENST00000537706 FLT3LGP49771 235 aa11.9□□□□□ -0.51
USP28-205ENST00000537706 HYPKQ9NX55 129 aa11.9□□□□□ -0.51
USP28-205ENST00000537706 CHPF2Q9P2E5 772 aa11.9□□□□□ -0.51
USP28-205ENST00000537706 DBF4Q9UBU7 674 aaPredicted RBP11.9□□□□□ -0.51
USP28-205ENST00000537706 ZNF70Q9UC06 446 aaPredicted RBP11.9□□□□□ -0.51
USP28-205ENST00000537706 GABRQQ9UN88 632 aa11.9□□□□□ -0.51
USP28-205ENST00000537706 PPATQ06203 517 aa11.89□□□□□ -0.51
USP28-205ENST00000537706 SPDYE2Q495Y8 402 aa11.89□□□□□ -0.51
USP28-205ENST00000537706 WRNIP1Q96S55 665 aa11.89□□□□□ -0.51
USP28-205ENST00000537706 CD209Q9NNX6 404 aa11.89□□□□□ -0.51
USP28-205ENST00000537706 SNCAIPQ9Y6H5 919 aa11.89□□□□□ -0.51
USP28-205ENST00000537706 ZSWIM8A7E2V4 1837 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 MDM2Q00987 491 aaPredicted RBP11.88□□□□□ -0.51
USP28-205ENST00000537706 HDGFL1Q5TGJ6 251 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 DCAF15Q66K64 600 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 CCDC191Q8NCU4 936 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 IL27Q8NEV9 243 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 COA7Q96BR5 231 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 HCN4Q9Y3Q4 1203 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 ARIH1Q9Y4X5 557 aaPredicted RBP11.88□□□□□ -0.51
USP28-205ENST00000537706 CTSWP56202 376 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 ZNF804AQ7Z570 1209 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 TXNRD3Q86VQ6 643 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 MYLIPQ8WY64 445 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 C1QTNF1Q9BXJ1 281 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 SEMA6BQ9H3T3 888 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 CWC25Q9NXE8 425 aaPredicted RBP11.88□□□□□ -0.51
USP28-205ENST00000537706 PCDHAC2Q9Y5I4 1007 aa11.88□□□□□ -0.51
USP28-205ENST00000537706 TCP10L2B9ZVM9 353 aa11.87□□□□□ -0.51
USP28-205ENST00000537706 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.87□□□□□ -0.51
USP28-205ENST00000537706 HMX1Q9NP08 348 aaPredicted RBP11.87□□□□□ -0.51
USP28-205ENST00000537706 BCRP11274 1271 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 LMOD3Q0VAK6 560 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 CERS5Q8N5B7 392 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 MPHOSPH8Q99549 860 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 MYD88Q99836 296 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 TMEM39BQ9GZU3 492 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 TMOD2Q9NZR1 351 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 SYNGAP1Q96PV0 1343 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 TEPSINQ96N21 525 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 TDRD3Q9H7E2 651 aaKnown RBP11.86□□□□□ -0.51
USP28-205ENST00000537706 PRKAG2Q9UGJ0 569 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 SERPINA10Q9UK55 444 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 KCNH4Q9UQ05 1017 aa11.86□□□□□ -0.51
USP28-205ENST00000537706 COL6A3P12111 3177 aa11.85□□□□□ -0.51
USP28-205ENST00000537706 HMGCRP04035 888 aa11.85□□□□□ -0.51
USP28-205ENST00000537706 HOXB7P09629 217 aa11.85□□□□□ -0.51
USP28-205ENST00000537706 OTOFQ9HC10 1997 aa11.85□□□□□ -0.51
USP28-205ENST00000537706 ZKSCAN4Q969J2 545 aaPredicted RBP11.84□□□□□ -0.51
USP28-205ENST00000537706 ZNF341Q9BYN7 854 aa11.84□□□□□ -0.51
USP28-205ENST00000537706 COL2A1P02458 1487 aaPredicted RBP11.83□□□□□ -0.51
USP28-205ENST00000537706 ECM29Q5VYK3 1845 aa11.83□□□□□ -0.52
USP28-205ENST00000537706 A0A0C4DFX4 3053 aa11.83□□□□□ -0.52
USP28-205ENST00000537706 KLRK1P26718 216 aa11.83□□□□□ -0.52
USP28-205ENST00000537706 FASTKD5Q7L8L6 764 aaKnown RBP11.83□□□□□ -0.52
USP28-205ENST00000537706 DZIP1LQ8IYY4 767 aaKnown RBP11.83□□□□□ -0.52
USP28-205ENST00000537706 IL1R1P14778 569 aa11.82□□□□□ -0.52
USP28-205ENST00000537706 SMAD3P84022 425 aaKnown RBP11.82□□□□□ -0.52
USP28-205ENST00000537706 TTLL11Q8NHH1 800 aa11.82□□□□□ -0.52
USP28-205ENST00000537706 SMCR8Q8TEV9 937 aaPredicted RBP11.82□□□□□ -0.52
USP28-205ENST00000537706 ATXN2LQ8WWM7 1075 aaKnown RBP11.82□□□□□ -0.52
USP28-205ENST00000537706 GREM2Q9H772 168 aa11.82□□□□□ -0.52
USP28-205ENST00000537706 OGDHLQ9ULD0 1010 aa11.82□□□□□ -0.52
USP28-205ENST00000537706 TTF2Q9UNY4 1162 aaKnown RBP11.82□□□□□ -0.52
USP28-205ENST00000537706 DDX58O95786 925 aaKnown RBP11.82□□□□□ -0.52
USP28-205ENST00000537706 CYP2C8P10632 490 aa11.82□□□□□ -0.52
USP28-205ENST00000537706 C15orf52Q6ZUT6 534 aaKnown RBP11.82□□□□□ -0.52
USP28-205ENST00000537706 CDAN1Q8IWY9 1227 aa11.82□□□□□ -0.52
USP28-205ENST00000537706 JARID2Q92833 1246 aaPredicted RBP11.82□□□□□ -0.52
USP28-205ENST00000537706 AOX1Q06278 1338 aa11.81□□□□□ -0.52
USP28-205ENST00000537706 CXCL11O14625 94 aa11.81□□□□□ -0.52
USP28-205ENST00000537706 PPP2R1AP30153 589 aa11.81□□□□□ -0.52
USP28-205ENST00000537706 UHRF1Q96T88 793 aaPredicted RBP11.81□□□□□ -0.52
USP28-205ENST00000537706 RIPK4P57078 832 aa11.8□□□□□ -0.52
USP28-205ENST00000537706 CHRNDQ07001 517 aa11.8□□□□□ -0.52
USP28-205ENST00000537706 ADAMTS19Q8TE59 1207 aa11.8□□□□□ -0.52
USP28-205ENST00000537706 SNX27Q96L92 541 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms