RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CFAP58Q5T655 872 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 NECAB1Q8N987 351 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 SNRPA1P09661 255 aaKnown RBP12.02□□□□□ -0.49
CLIP1-209ENST00000537178 GJC1P36383 396 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 HEATR3Q7Z4Q2 680 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 NEK11Q8NG66 645 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 SAMD15Q9P1V8 674 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 MTUS1Q9ULD2 1270 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 CLTCQ00610 1675 aaKnown RBP12.01□□□□□ -0.49
CLIP1-209ENST00000537178 CYP7A1P22680 504 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 SMARCC2Q8TAQ2 1214 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 CCDC114Q96M63 670 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 GMNNO75496 209 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 NAPAP54920 295 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 NBPF11Q86T75 865 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 TRIM7Q9C029 511 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 ZKSCAN5Q9Y2L8 839 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 TLDC2A0PJX2 215 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 SPTLC2O15270 562 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 CALM1P0DP23 149 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 CALM2P0DP24 149 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 CALM3P0DP25 149 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 HSP90AA4PQ58FG1 418 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 WAPLQ7Z5K2 1190 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 CCDC50Q8IVM0 306 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 IL16Q14005 1332 aa12.01□□□□□ -0.49
CLIP1-209ENST00000537178 FAM13AO94988 1023 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 LMOD1P29536 600 aaPredicted RBP12□□□□□ -0.49
CLIP1-209ENST00000537178 ATP2B3Q16720 1220 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 CFAP157Q5JU67 520 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 ANKRD13DQ6ZTN6 518 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 DNAJC25Q9H1X3 360 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 RBM8AQ9Y5S9 174 aaKnown RBP12□□□□□ -0.49
CLIP1-209ENST00000537178 FRMPD1Q5SYB0 1578 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 RLBP1P12271 317 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 ARID5AQ03989 594 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 ARHGAP45Q92619 1136 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 ODF2LQ9ULJ1 636 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 CDC42BPGQ6DT37 1551 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 INF2Q27J81 1249 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 CNPY2Q9Y2B0 182 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 PCDHB15Q9Y5E8 787 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 SLC4A4Q9Y6R1 1079 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 FOXO3O43524 673 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 LACTBP83111 547 aaPredicted RBP12□□□□□ -0.49
CLIP1-209ENST00000537178 MCMDC2Q4G0Z9 681 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 USP48Q86UV5 1035 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 RPUSD2Q8IZ73 545 aaKnown RBP12□□□□□ -0.49
CLIP1-209ENST00000537178 TRAF3IP1Q8TDR0 691 aaPredicted RBP12□□□□□ -0.49
CLIP1-209ENST00000537178 DHX58Q96C10 678 aa12□□□□□ -0.49
CLIP1-209ENST00000537178 LUC7L2Q9Y383 392 aaKnown RBP12□□□□□ -0.49
CLIP1-209ENST00000537178 NPHP3Q7Z494 1330 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 ZEB2O60315 1214 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 RAPGEF3O95398 923 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 MARCKSP29966 332 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-209ENST00000537178 HDAC9Q9UKV0 1011 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 F13A1P00488 732 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 NKIRAS1Q9NYS0 192 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 FANCAO15360 1455 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 SPDYE3A6NKU9 549 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 ZNF830Q96NB3 372 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-209ENST00000537178 GUCA1BQ9UMX6 200 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 TULP4Q9NRJ4 1543 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 RTL1A6NKG5 1358 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 SDSP20132 328 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 ARID4AP29374 1257 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-209ENST00000537178 HDAC1Q13547 482 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-209ENST00000537178 NBPF6Q5VWK0 638 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 NBPF5PQ86XG9 351 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-209ENST00000537178 NBPF4Q96M43 638 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 KCNK9Q9NPC2 374 aa11.99□□□□□ -0.49
CLIP1-209ENST00000537178 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLIP1-209ENST00000537178 TMEM110-MUSTN1A8MSY1 372 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 PPP1R7Q15435 360 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 NAA16Q6N069 864 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-209ENST00000537178 ST5P78524 1137 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 OGFOD1Q8N543 542 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 ZNF622Q969S3 477 aaKnown RBP eCLIP11.98□□□□□ -0.491e-6■■□□□ 14.2
CLIP1-209ENST00000537178 NGLY1Q96IV0 654 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 CSRNP2Q9H175 543 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 NSD2O96028 1365 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 ADAMTS2O95450 1211 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 RPL13P26373 211 aaKnown RBP11.98□□□□□ -0.49
CLIP1-209ENST00000537178 RFC4P35249 363 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 RSRC1Q96IZ7 334 aaKnown RBP11.98□□□□□ -0.49
CLIP1-209ENST00000537178 WASLO00401 505 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-209ENST00000537178 IL15P40933 162 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-209ENST00000537178 UBXN1Q04323 297 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 TSHZ3Q63HK5 1081 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 CEP128Q6ZU80 1094 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 FAM76AQ8TAV0 307 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 ESYT1Q9BSJ8 1104 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 LRRC2Q9BYS8 371 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 KNDC1Q76NI1 1749 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 ATP7AQ04656 1500 aa11.98□□□□□ -0.49
CLIP1-209ENST00000537178 CA8P35219 290 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 PDE1AP54750 535 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 TYRO3Q06418 890 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 SLC4A8Q2Y0W8 1093 aa11.97□□□□□ -0.49
CLIP1-209ENST00000537178 HS1BP3Q53T59 392 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms