RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 IMMTQ16891 758 aaKnown RBP13.42□□□□□ -0.26
SYNE1-234ENST00000536990 DNAJC10Q8IXB1 793 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 POLR3EQ9NVU0 708 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 SLAIN2Q9P270 581 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 HPS5Q9UPZ3 1129 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 SHANK3Q9BYB0 1731 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 ZBTB38Q8NAP3 1195 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-234ENST00000536990 FBXO18Q8NFZ0 1043 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 KCNG4Q8TDN1 519 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 PLA2G12BQ9BX93 195 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 MORC2Q9Y6X9 1032 aaPredicted RBP13.42□□□□□ -0.26
SYNE1-234ENST00000536990 KIF20AO95235 890 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 CSF1RP07333 972 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 STK38Q15208 465 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 KIF18AQ8NI77 898 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 C8orf76Q96K31 380 aa13.42□□□□□ -0.26
SYNE1-234ENST00000536990 ZAP70P43403 619 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 HAND2P61296 217 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 MB21D2Q8IYB1 491 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-234ENST00000536990 ASAP1Q9ULH1 1129 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 SPTLC2O15270 562 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 STARD3NLO95772 234 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 FGAP02671 866 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 POLR3DP05423 398 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-234ENST00000536990 SCARF1Q14162 830 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 MYSM1Q5VVJ2 828 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 E4F1Q66K89 784 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-234ENST00000536990 ZNF397Q8NF99 534 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-234ENST00000536990 APPBP2Q92624 585 aa13.41□□□□□ -0.26
SYNE1-234ENST00000536990 XPO4Q9C0E2 1151 aaKnown RBP13.41□□□□□ -0.26
SYNE1-234ENST00000536990 KMT5BQ4FZB7 885 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 AXDND1Q5T1B0 1012 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-234ENST00000536990 ARMCX5Q6P1M9 558 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 ERO1AQ96HE7 468 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 KIF28PB7ZC32 967 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 KIF2AO00139 706 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-234ENST00000536990 PRC1O43663 620 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 ANTXR2P58335 489 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 NCAPHQ15003 741 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 SF3A1Q15459 793 aaKnown RBP13.4□□□□□ -0.26
SYNE1-234ENST00000536990 BRAPQ7Z569 592 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 PIGBQ92521 554 aa13.4□□□□□ -0.26
SYNE1-234ENST00000536990 ORC3Q9UBD5 711 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-234ENST00000536990 KLF18A0A0U1RQI7 1052 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 NLRP12P59046 1061 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 METTL24Q5JXM2 366 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 GIGYF2Q6Y7W6 1299 aaKnown RBP13.39□□□□□ -0.27
SYNE1-234ENST00000536990 BCL11BQ9C0K0 894 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-234ENST00000536990 PUS7LQ9H0K6 701 aaKnown RBP13.39□□□□□ -0.27
SYNE1-234ENST00000536990 GJB4Q9NTQ9 266 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 IFNKQ9P0W0 207 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 MAP3K15Q6ZN16 1313 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 ZNF202O95125 648 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 SLC3A2P08195 630 aaKnown RBP13.39□□□□□ -0.27
SYNE1-234ENST00000536990 LDHAL6AQ6ZMR3 332 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 CCDC150Q8NCX0 1101 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.39□□□□□ -0.27
SYNE1-234ENST00000536990 V9GYY5 206 aaPredicted RBP13.39□□□□□ -0.27
SYNE1-234ENST00000536990 ABCC12Q96J65 1359 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 C4AP0C0L4 1744 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 C4BP0C0L5 1744 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 TOGARAM1Q9Y4F4 1720 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 KAT6BQ8WYB5 2073 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 GOLGA8BA8MQT2 603 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 DHX16O60231 1041 aaKnown RBP13.39□□□□□ -0.27
SYNE1-234ENST00000536990 GPTP24298 496 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 HSP90AB3PQ58FF7 597 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 PI16Q6UXB8 463 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 TMC6Q7Z403 805 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 SYNE4Q8N205 404 aa13.39□□□□□ -0.27
SYNE1-234ENST00000536990 SLU7O95391 586 aaKnown RBP13.38□□□□□ -0.27
SYNE1-234ENST00000536990 CMA1P23946 247 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 KCNJ6P48051 423 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 KIF23Q02241 960 aaPredicted RBP13.38□□□□□ -0.27
SYNE1-234ENST00000536990 ANO1Q5XXA6 986 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 RALYLQ86SE5 291 aaKnown RBP13.38□□□□□ -0.27
SYNE1-234ENST00000536990 NCOA7Q8NI08 942 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 PPP1R13BQ96KQ4 1090 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 L2HGDHQ9H9P8 463 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 FAM53CQ9NYF3 392 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 RIPOR2Q9Y4F9 1068 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 BIN1O00499 593 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 ZNF213O14771 459 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 GPAA1O43292 621 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 SMC2O95347 1197 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 PFKFB1P16118 471 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 ITGA6P23229 1130 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 GABPB1Q06547 395 aaPredicted RBP13.38□□□□□ -0.27
SYNE1-234ENST00000536990 ELF2Q15723 593 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 HLFQ16534 295 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 FBXO38Q6PIJ6 1188 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.38□□□□□ -0.27
SYNE1-234ENST00000536990 MROH7-TTC4A0A0A0MT08 1334 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 CDHR2Q9BYE9 1310 aa13.38□□□□□ -0.27
SYNE1-234ENST00000536990 MYH7P12883 1935 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 PSDA5PKW4 1024 aaPredicted RBP13.37□□□□□ -0.27
SYNE1-234ENST00000536990 IGSF3O75054 1194 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 ZRSR1Q15695 479 aaKnown RBP13.37□□□□□ -0.27
SYNE1-234ENST00000536990 NLRP10Q86W26 655 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 TTLL11Q8NHH1 800 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms