RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 ZNF521Q96K83 1311 aa16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 IRS2Q9Y4H2 1338 aa16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 TCP10L2B9ZVM9 353 aa16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 SOX10P56693 466 aa16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 SLFN5Q08AF3 891 aa16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 NBPF12Q5TAG4 269 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 FBXO46Q6PJ61 603 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 IFNL1Q8IU54 200 aa16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 WDR66Q8TBY9 1149 aa16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 ERO1AQ96HE7 468 aa16.51■□□□□ 0.23
CLSTN3-205ENST00000535452 KIF16BQ96L93 1317 aa16.5■□□□□ 0.23
CLSTN3-205ENST00000535452 LRRC24Q50LG9 513 aa16.5■□□□□ 0.23
CLSTN3-205ENST00000535452 DCAF15Q66K64 600 aa16.5■□□□□ 0.23
CLSTN3-205ENST00000535452 FBXO33Q7Z6M2 555 aa16.5■□□□□ 0.23
CLSTN3-205ENST00000535452 LPIN2Q92539 896 aa16.5■□□□□ 0.23
CLSTN3-205ENST00000535452 CEP126Q9P2H0 1117 aa16.5■□□□□ 0.23
CLSTN3-205ENST00000535452 FBXO3Q9UK99 471 aa16.5■□□□□ 0.23
CLSTN3-205ENST00000535452 HPS5Q9UPZ3 1129 aa16.5■□□□□ 0.23
CLSTN3-205ENST00000535452 EYA2O00167 538 aa16.49■□□□□ 0.23
CLSTN3-205ENST00000535452 CFHR5Q9BXR6 569 aa16.49■□□□□ 0.23
CLSTN3-205ENST00000535452 ELP3Q9H9T3 547 aa16.49■□□□□ 0.23
CLSTN3-205ENST00000535452 GTF2A2P52657 109 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 MAP3K9P80192 1104 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 ZGPATQ8N5A5 531 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 ANKRD44Q8N8A2 993 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 OPTNQ96CV9 577 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 KAZALD1Q96I82 304 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 CLMNQ96JQ2 1002 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 USP44Q9H0E7 712 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 FZD1Q9UP38 647 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 TRIM17Q9Y577 477 aa16.48■□□□□ 0.23
CLSTN3-205ENST00000535452 ECM29Q5VYK3 1845 aa16.47■□□□□ 0.23
CLSTN3-205ENST00000535452 IPO8O15397 1037 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-205ENST00000535452 USP2O75604 605 aaPredicted RBP16.47■□□□□ 0.23
CLSTN3-205ENST00000535452 BCAMP50895 628 aa16.47■□□□□ 0.23
CLSTN3-205ENST00000535452 MRIQ9BWK5 157 aa16.47■□□□□ 0.23
CLSTN3-205ENST00000535452 PCDHAC2Q9Y5I4 1007 aa16.47■□□□□ 0.23
CLSTN3-205ENST00000535452 KIF22Q14807 665 aa16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 INTS3Q68E01 1043 aaKnown RBP16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 FAM83AQ86UY5 434 aa16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 SLF2Q8IX21 1173 aa16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 KLHDC4Q8TBB5 520 aa16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 ZDHHC15Q96MV8 337 aa16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 TMEM39BQ9GZU3 492 aa16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 SIL1Q9H173 461 aa16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 ZFYVE28Q9HCC9 887 aa16.46■□□□□ 0.23
CLSTN3-205ENST00000535452 A0A1B0GUL6 1792 aa16.46■□□□□ 0.22
CLSTN3-205ENST00000535452 CIAO1O76071 339 aa16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 LDHBP07195 334 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 IL15P40933 162 aaPredicted RBP16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 ATP2B3Q16720 1220 aa16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 FKBP1CQ5VVH2 108 aa16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 HHIPL2Q6UWX4 724 aa16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 DENND2AQ9ULE3 1009 aa16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 NOB1Q9ULX3 412 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 ZNF646O15015 1829 aaPredicted RBP16.45■□□□□ 0.22
CLSTN3-205ENST00000535452 CCL15-CCL14A0A0B4J2E2 113 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 CCER2I3L3R5 266 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 SEMA3EO15041 775 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 GNAI3P08754 354 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 SP3Q02447 781 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 TAF1CQ15572 869 aaPredicted RBP16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 CCL15Q16663 113 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 OTUD5Q96G74 571 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 WRNIP1Q96S55 665 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 EFCC1Q9HA90 598 aa16.44■□□□□ 0.22
CLSTN3-205ENST00000535452 CETPP11597 493 aa16.43■□□□□ 0.22
CLSTN3-205ENST00000535452 VGLL2Q8N8G2 317 aa16.43■□□□□ 0.22
CLSTN3-205ENST00000535452 ZNF341Q9BYN7 854 aa16.43■□□□□ 0.22
CLSTN3-205ENST00000535452 AKAP2Q9Y2D5 859 aa16.43■□□□□ 0.22
CLSTN3-205ENST00000535452 CRHR2Q13324 411 aa16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 SNAPC2Q13487 334 aa16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 VGLL4Q14135 290 aa16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 GORABQ5T7V8 394 aa16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 SPTY2D1Q68D10 685 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 NBPF11Q86T75 865 aa16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 ERO1BQ86YB8 467 aa16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 DZIP1Q86YF9 867 aaKnown RBP16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 CDCA7LQ96GN5 454 aa16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 ARAP2Q8WZ64 1704 aa16.42■□□□□ 0.22
CLSTN3-205ENST00000535452 IGF2BP3O00425 579 aaKnown RBP eCLIP16.41■□□□□ 0.22
CLSTN3-205ENST00000535452 CACNB3P54284 484 aa16.41■□□□□ 0.22
CLSTN3-205ENST00000535452 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.41■□□□□ 0.22
CLSTN3-205ENST00000535452 TMEM106CQ9BVX2 250 aa16.41■□□□□ 0.22
CLSTN3-205ENST00000535452 LRRFIP2Q9Y608 721 aaKnown RBP16.41■□□□□ 0.22
CLSTN3-205ENST00000535452 SSC5DA1L4H1 1573 aa16.41■□□□□ 0.22
CLSTN3-205ENST00000535452 FGFR2P21802 821 aa16.4■□□□□ 0.22
CLSTN3-205ENST00000535452 OTOP1Q7RTM1 612 aa16.4■□□□□ 0.22
CLSTN3-205ENST00000535452 ZSCAN29Q8IWY8 852 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-205ENST00000535452 ARHGAP45Q92619 1136 aa16.4■□□□□ 0.22
CLSTN3-205ENST00000535452 TEPSINQ96N21 525 aa16.4■□□□□ 0.22
CLSTN3-205ENST00000535452 RPAP1Q9BWH6 1393 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-205ENST00000535452 TESPA1A2RU30 521 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-205ENST00000535452 SPDYE5A6NIY4 337 aa16.39■□□□□ 0.21
CLSTN3-205ENST00000535452 SRGAP3O43295 1099 aa16.39■□□□□ 0.21
CLSTN3-205ENST00000535452 MVPQ14764 893 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-205ENST00000535452 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-205ENST00000535452 CD99L2Q8TCZ2 262 aa16.39■□□□□ 0.21
CLSTN3-205ENST00000535452 FAM151AQ8WW52 585 aa16.39■□□□□ 0.21
CLSTN3-205ENST00000535452 NOL10Q9BSC4 688 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms