RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 UQCRFS1P1P0C7P4 283 aa18.48■□□□□ 0.55
CPSF1-208ENST00000532560 RBM5P52756 815 aaKnown RBP eCLIP18.48■□□□□ 0.55
CPSF1-208ENST00000532560 TEKT1Q969V4 418 aa18.48■□□□□ 0.55
CPSF1-208ENST00000532560 EAF2Q96CJ1 260 aaPredicted RBP18.48■□□□□ 0.55
CPSF1-208ENST00000532560 KLRG1Q96E93 195 aa18.48■□□□□ 0.55
CPSF1-208ENST00000532560 KIF1BPQ96EK5 621 aa18.48■□□□□ 0.55
CPSF1-208ENST00000532560 PRMT6Q96LA8 375 aaPredicted RBP18.48■□□□□ 0.55
CPSF1-208ENST00000532560 CRBNQ96SW2 442 aa18.48■□□□□ 0.55
CPSF1-208ENST00000532560 DBNLQ9UJU6 430 aaKnown RBP18.48■□□□□ 0.55
CPSF1-208ENST00000532560 CNTNAP1P78357 1384 aa18.47■□□□□ 0.55
CPSF1-208ENST00000532560 PRDX5P30044 214 aa18.47■□□□□ 0.55
CPSF1-208ENST00000532560 CCDC158Q5M9N0 1113 aa18.47■□□□□ 0.55
CPSF1-208ENST00000532560 DLK2Q6UY11 383 aa18.47■□□□□ 0.55
CPSF1-208ENST00000532560 CDCA5Q96FF9 252 aa18.47■□□□□ 0.55
CPSF1-208ENST00000532560 ZNF512BQ96KM6 892 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-208ENST00000532560 HMG20BQ9P0W2 317 aa18.47■□□□□ 0.55
CPSF1-208ENST00000532560 AOX1Q06278 1338 aa18.47■□□□□ 0.55
CPSF1-208ENST00000532560 RASSF10A6NK89 507 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 LDHBP07195 334 aaKnown RBP18.46■□□□□ 0.55
CPSF1-208ENST00000532560 MCAMP43121 646 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 SPDYE2Q495Y8 402 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 TTC39AQ5SRH9 613 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 HHIPL2Q6UWX4 724 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 AACSQ86V21 672 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 SPATA5Q8NB90 893 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 ZDHHC15Q96MV8 337 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 ZNF408Q9H9D4 720 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 TLR7Q9NYK1 1049 aaKnown RBP18.46■□□□□ 0.55
CPSF1-208ENST00000532560 TLL2Q9Y6L7 1015 aa18.46■□□□□ 0.55
CPSF1-208ENST00000532560 CLRN2A0PK11 232 aa18.45■□□□□ 0.54
CPSF1-208ENST00000532560 PI16Q6UXB8 463 aa18.45■□□□□ 0.54
CPSF1-208ENST00000532560 CCDC8Q9H0W5 538 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-208ENST00000532560 ABT1Q9ULW3 272 aaKnown RBP18.45■□□□□ 0.54
CPSF1-208ENST00000532560 PPP2R3BQ9Y5P8 575 aa18.45■□□□□ 0.54
CPSF1-208ENST00000532560 AKAP11Q9UKA4 1901 aa18.45■□□□□ 0.54
CPSF1-208ENST00000532560 AAMPQ13685 434 aa18.44■□□□□ 0.54
CPSF1-208ENST00000532560 SPTY2D1Q68D10 685 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-208ENST00000532560 CLASRPQ8N2M8 674 aaKnown RBP18.44■□□□□ 0.54
CPSF1-208ENST00000532560 GBA2Q9HCG7 927 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-208ENST00000532560 IL1RAPL2Q9NP60 686 aa18.44■□□□□ 0.54
CPSF1-208ENST00000532560 SCAF8Q9UPN6 1271 aaKnown RBP18.44■□□□□ 0.54
CPSF1-208ENST00000532560 PCDHB15Q9Y5E8 787 aa18.44■□□□□ 0.54
CPSF1-208ENST00000532560 PAPPA2Q9BXP8 1791 aa18.44■□□□□ 0.54
CPSF1-208ENST00000532560 APBB1O00213 710 aa18.43■□□□□ 0.54
CPSF1-208ENST00000532560 TNFAIP1Q13829 316 aa18.43■□□□□ 0.54
CPSF1-208ENST00000532560 APOBEC3HQ6NTF7 200 aaKnown RBP18.43■□□□□ 0.54
CPSF1-208ENST00000532560 SAPCD2Q86UD0 394 aa18.43■□□□□ 0.54
CPSF1-208ENST00000532560 HHIPL1Q96JK4 782 aa18.43■□□□□ 0.54
CPSF1-208ENST00000532560 VEZTQ9HBM0 779 aa18.43■□□□□ 0.54
CPSF1-208ENST00000532560 ZNF70Q9UC06 446 aaPredicted RBP18.43■□□□□ 0.54
CPSF1-208ENST00000532560 ABCF2Q9UG63 623 aa18.43■□□□□ 0.54
CPSF1-208ENST00000532560 MKRN1Q9UHC7 482 aaKnown RBP18.43■□□□□ 0.54
CPSF1-208ENST00000532560 DAGLAQ9Y4D2 1042 aa18.43■□□□□ 0.54
CPSF1-208ENST00000532560 DIXDC1Q155Q3 683 aa18.42■□□□□ 0.54
CPSF1-208ENST00000532560 DZIP1Q86YF9 867 aaKnown RBP18.42■□□□□ 0.54
CPSF1-208ENST00000532560 C2orf69Q8N8R5 385 aa18.42■□□□□ 0.54
CPSF1-208ENST00000532560 DEFB129Q9H1M3 183 aa18.42■□□□□ 0.54
CPSF1-208ENST00000532560 DCTPP1Q9H773 170 aa18.42■□□□□ 0.54
CPSF1-208ENST00000532560 TDRD3Q9H7E2 651 aaKnown RBP18.42■□□□□ 0.54
CPSF1-208ENST00000532560 MAST2Q6P0Q8 1798 aa18.42■□□□□ 0.54
CPSF1-208ENST00000532560 FKBP1BP68106 108 aa18.41■□□□□ 0.54
CPSF1-208ENST00000532560 DEFB115Q30KQ5 88 aa18.41■□□□□ 0.54
CPSF1-208ENST00000532560 ERICH6Q7L0X2 663 aa18.41■□□□□ 0.54
CPSF1-208ENST00000532560 JMYQ8N9B5 988 aa18.41■□□□□ 0.54
CPSF1-208ENST00000532560 LRRCC1Q9C099 1032 aa18.41■□□□□ 0.54
CPSF1-208ENST00000532560 SUPT16HQ9Y5B9 1047 aaKnown RBP18.41■□□□□ 0.54
CPSF1-208ENST00000532560 GAKO14976 1311 aa18.41■□□□□ 0.54
CPSF1-208ENST00000532560 MYH2Q9UKX2 1941 aa18.41■□□□□ 0.54
CPSF1-208ENST00000532560 IFIT2P09913 472 aaKnown RBP18.4■□□□□ 0.54
CPSF1-208ENST00000532560 NF2P35240 595 aa18.4■□□□□ 0.54
CPSF1-208ENST00000532560 PRAMEF18Q5VWM3 479 aa18.4■□□□□ 0.54
CPSF1-208ENST00000532560 SLF2Q8IX21 1173 aa18.4■□□□□ 0.54
CPSF1-208ENST00000532560 TMOD2Q9NZR1 351 aa18.4■□□□□ 0.54
CPSF1-208ENST00000532560 THSD7BQ9C0I4 1608 aa18.4■□□□□ 0.54
CPSF1-208ENST00000532560 IGSF3O75054 1194 aa18.39■□□□□ 0.53
CPSF1-208ENST00000532560 HUNKP57058 714 aa18.39■□□□□ 0.53
CPSF1-208ENST00000532560 MECOMQ03112 1051 aa18.39■□□□□ 0.53
CPSF1-208ENST00000532560 FKBP1CQ5VVH2 108 aa18.39■□□□□ 0.53
CPSF1-208ENST00000532560 TBC1D9Q6ZT07 1266 aa18.39■□□□□ 0.53
CPSF1-208ENST00000532560 FAM163AQ96GL9 167 aaPredicted RBP18.39■□□□□ 0.53
CPSF1-208ENST00000532560 SNRKQ9NRH2 765 aa18.39■□□□□ 0.53
CPSF1-208ENST00000532560 SSC5DA1L4H1 1573 aa18.38■□□□□ 0.53
CPSF1-208ENST00000532560 CYP2E1P05181 493 aaPredicted RBP18.38■□□□□ 0.53
CPSF1-208ENST00000532560 ZAP70P43403 619 aa18.38■□□□□ 0.53
CPSF1-208ENST00000532560 TNNI2P48788 182 aa18.38■□□□□ 0.53
CPSF1-208ENST00000532560 VEGFBP49765 207 aa18.38■□□□□ 0.53
CPSF1-208ENST00000532560 RASA3Q14644 834 aa18.38■□□□□ 0.53
CPSF1-208ENST00000532560 MROH7-TTC4A0A0A0MT08 1334 aa18.38■□□□□ 0.53
CPSF1-208ENST00000532560 TCP10L2B9ZVM9 353 aa18.37■□□□□ 0.53
CPSF1-208ENST00000532560 ECE1P42892 770 aa18.37■□□□□ 0.53
CPSF1-208ENST00000532560 GSTO1P78417 241 aa18.37■□□□□ 0.53
CPSF1-208ENST00000532560 FAM83AQ86UY5 434 aa18.37■□□□□ 0.53
CPSF1-208ENST00000532560 ZNF384Q8TF68 577 aa18.37■□□□□ 0.53
CPSF1-208ENST00000532560 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.37■□□□□ 0.53
CPSF1-208ENST00000532560 NSUN4Q96CB9 384 aaKnown RBP18.37■□□□□ 0.53
CPSF1-208ENST00000532560 RAI14Q9P0K7 980 aa18.37■□□□□ 0.53
CPSF1-208ENST00000532560 LRP2BPQ9P2M1 347 aa18.37■□□□□ 0.53
CPSF1-208ENST00000532560 RPAP1Q9BWH6 1393 aaPredicted RBP18.37■□□□□ 0.53
CPSF1-208ENST00000532560 CACNB3P54284 484 aa18.36■□□□□ 0.53
CPSF1-208ENST00000532560 HDAC1Q13547 482 aaPredicted RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms