RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 PPP4R2Q9NY27 417 aa12.24□□□□□ -0.45
CSDE1-213ENST00000530784 LOC100289279A0A1B0GTE1 492 aa12.23□□□□□ -0.45
CSDE1-213ENST00000530784 ALG1LQ6GMV1 187 aa12.23□□□□□ -0.45
CSDE1-213ENST00000530784 RUSC1Q9BVN2 902 aa12.23□□□□□ -0.45
CSDE1-213ENST00000530784 MROH2BQ7Z745 1585 aa12.22□□□□□ -0.45
CSDE1-213ENST00000530784 DYRK3O43781 588 aa12.22□□□□□ -0.45
CSDE1-213ENST00000530784 DLGAP3O95886 979 aa12.22□□□□□ -0.45
CSDE1-213ENST00000530784 ATP2B2Q01814 1243 aa12.22□□□□□ -0.45
CSDE1-213ENST00000530784 DTHD1Q6ZMT9 781 aa12.22□□□□□ -0.45
CSDE1-213ENST00000530784 NRSN2Q9GZP1 204 aa12.22□□□□□ -0.45
CSDE1-213ENST00000530784 H2AFB1P0C5Y9 115 aa12.21□□□□□ -0.45
CSDE1-213ENST00000530784 H2AFB2P0C5Z0 115 aa12.21□□□□□ -0.45
CSDE1-213ENST00000530784 FAAP100Q0VG06 881 aa12.21□□□□□ -0.45
CSDE1-213ENST00000530784 RNF208Q9H0X6 261 aa12.21□□□□□ -0.45
CSDE1-213ENST00000530784 LDHBP07195 334 aaKnown RBP12.2□□□□□ -0.46
CSDE1-213ENST00000530784 ITGB7P26010 798 aa12.2□□□□□ -0.46
CSDE1-213ENST00000530784 ZNF157P51786 506 aaPredicted RBP12.2□□□□□ -0.46
CSDE1-213ENST00000530784 RPS26P11Q5JNZ5 115 aaPredicted RBP12.2□□□□□ -0.46
CSDE1-213ENST00000530784 DNAJC14Q6Y2X3 702 aaPredicted RBP12.2□□□□□ -0.46
CSDE1-213ENST00000530784 CEP41Q9BYV8 373 aa12.2□□□□□ -0.46
CSDE1-213ENST00000530784 OSBPL7Q9BZF2 842 aa12.2□□□□□ -0.46
CSDE1-213ENST00000530784 LAMC3Q9Y6N6 1575 aa12.2□□□□□ -0.46
CSDE1-213ENST00000530784 MEGF11A6BM72 1044 aa12.19□□□□□ -0.46
CSDE1-213ENST00000530784 TRIM56Q9BRZ2 755 aaKnown RBP12.19□□□□□ -0.46
CSDE1-213ENST00000530784 EIF4EBP3O60516 100 aaPredicted RBP12.18□□□□□ -0.46
CSDE1-213ENST00000530784 MAOBP27338 520 aa12.18□□□□□ -0.46
CSDE1-213ENST00000530784 TMPRSS13Q9BYE2 586 aa12.18□□□□□ -0.46
CSDE1-213ENST00000530784 THOC2Q8NI27 1593 aaKnown RBP12.18□□□□□ -0.46
CSDE1-213ENST00000530784 CYP11A1P05108 521 aa12.17□□□□□ -0.46
CSDE1-213ENST00000530784 CTSBP07858 339 aa12.17□□□□□ -0.46
CSDE1-213ENST00000530784 XRCC5P13010 732 aaKnown RBP12.17□□□□□ -0.46
CSDE1-213ENST00000530784 POU4F3Q15319 338 aa12.17□□□□□ -0.46
CSDE1-213ENST00000530784 ANKRD34AQ69YU3 496 aa12.17□□□□□ -0.46
CSDE1-213ENST00000530784 HOMEZQ8IX15 550 aa12.17□□□□□ -0.46
CSDE1-213ENST00000530784 ARMC10Q8N2F6 343 aa12.17□□□□□ -0.46
CSDE1-213ENST00000530784 DDX54Q8TDD1 881 aaKnown RBP12.17□□□□□ -0.46
CSDE1-213ENST00000530784 FAM46AQ96IP4 442 aaKnown RBP12.17□□□□□ -0.46
CSDE1-213ENST00000530784 AKAP2Q9Y2D5 859 aa12.17□□□□□ -0.46
CSDE1-213ENST00000530784 ECEL1O95672 775 aa12.16□□□□□ -0.46
CSDE1-213ENST00000530784 COL19A1Q14993 1142 aa12.16□□□□□ -0.46
CSDE1-213ENST00000530784 NUTM2GQ5VZR2 741 aa12.16□□□□□ -0.46
CSDE1-213ENST00000530784 PRR23CQ6ZRP0 262 aa12.16□□□□□ -0.46
CSDE1-213ENST00000530784 NPAS4Q8IUM7 802 aa12.16□□□□□ -0.46
CSDE1-213ENST00000530784 C3orf58Q8NDZ4 430 aa12.16□□□□□ -0.46
CSDE1-213ENST00000530784 ZFYVE1Q9HBF4 777 aa12.16□□□□□ -0.46
CSDE1-213ENST00000530784 PREPP48147 710 aa12.15□□□□□ -0.46
CSDE1-213ENST00000530784 CCDC27Q2M243 656 aa12.15□□□□□ -0.46
CSDE1-213ENST00000530784 EXOSC6Q5RKV6 272 aaKnown RBP12.15□□□□□ -0.46
CSDE1-213ENST00000530784 FDX2Q6P4F2 183 aa12.15□□□□□ -0.46
CSDE1-213ENST00000530784 SPG7Q9UQ90 795 aa12.15□□□□□ -0.46
CSDE1-213ENST00000530784 EAPPQ56P03 285 aaPredicted RBP12.14□□□□□ -0.47
CSDE1-213ENST00000530784 UTP4Q969X6 686 aaKnown RBP12.14□□□□□ -0.47
CSDE1-213ENST00000530784 PDS5BQ9NTI5 1447 aa12.13□□□□□ -0.47
CSDE1-213ENST00000530784 GIPC1O14908 333 aa12.13□□□□□ -0.47
CSDE1-213ENST00000530784 SART1O43290 800 aaKnown RBP12.13□□□□□ -0.47
CSDE1-213ENST00000530784 PRPF40AO75400 957 aaKnown RBP12.13□□□□□ -0.47
CSDE1-213ENST00000530784 C12orf50Q8NA57 414 aaPredicted RBP12.13□□□□□ -0.47
CSDE1-213ENST00000530784 SMG8Q8ND04 991 aaKnown RBP12.13□□□□□ -0.47
CSDE1-213ENST00000530784 CORO1BQ9BR76 489 aa12.13□□□□□ -0.47
CSDE1-213ENST00000530784 SRCIN1Q9C0H9 1055 aa12.13□□□□□ -0.47
CSDE1-213ENST00000530784 SUGCTQ9HAC7 445 aa12.13□□□□□ -0.47
CSDE1-213ENST00000530784 RNF19AQ9NV58 838 aa12.13□□□□□ -0.47
CSDE1-213ENST00000530784 GPN3Q9UHW5 284 aaPredicted RBP12.13□□□□□ -0.47
CSDE1-213ENST00000530784 GSTT1P30711 240 aa12.12□□□□□ -0.47
CSDE1-213ENST00000530784 UVSSAQ2YD98 709 aa12.12□□□□□ -0.47
CSDE1-213ENST00000530784 PRSS36Q5K4E3 855 aa12.12□□□□□ -0.47
CSDE1-213ENST00000530784 CYP4F12Q9HCS2 524 aa12.12□□□□□ -0.47
CSDE1-213ENST00000530784 TMEM39AQ9NV64 488 aa12.12□□□□□ -0.47
CSDE1-213ENST00000530784 DRD2P14416 443 aa12.11□□□□□ -0.47
CSDE1-213ENST00000530784 AP3B2Q13367 1082 aa12.11□□□□□ -0.47
CSDE1-213ENST00000530784 MYRFLQ96LU7 910 aa12.11□□□□□ -0.47
CSDE1-213ENST00000530784 C12orf49Q9H741 205 aa12.11□□□□□ -0.47
CSDE1-213ENST00000530784 KIF21AQ7Z4S6 1674 aa12.1□□□□□ -0.47
CSDE1-213ENST00000530784 DHX15O43143 795 aaKnown RBP12.1□□□□□ -0.47
CSDE1-213ENST00000530784 TIAF1O95411 115 aa12.1□□□□□ -0.47
CSDE1-213ENST00000530784 DUSP9Q99956 384 aaKnown RBP12.1□□□□□ -0.47
CSDE1-213ENST00000530784 RAXQ9Y2V3 346 aa12.1□□□□□ -0.47
CSDE1-213ENST00000530784 PPP2R3AQ06190 1150 aa12.09□□□□□ -0.47
CSDE1-213ENST00000530784 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.09□□□□□ -0.47
CSDE1-213ENST00000530784 CADPSQ9ULU8 1353 aa12.08□□□□□ -0.48
CSDE1-213ENST00000530784 USP17L7P0C7H9 530 aa12.08□□□□□ -0.48
CSDE1-213ENST00000530784 BMP3P12645 472 aa12.08□□□□□ -0.48
CSDE1-213ENST00000530784 GNA15P30679 374 aa12.08□□□□□ -0.48
CSDE1-213ENST00000530784 TPTE2Q6XPS3 522 aa12.08□□□□□ -0.48
CSDE1-213ENST00000530784 FRMD6Q96NE9 622 aa12.08□□□□□ -0.48
CSDE1-213ENST00000530784 ZC3H12CQ9C0D7 883 aaKnown RBP12.08□□□□□ -0.48
CSDE1-213ENST00000530784 STOML1Q9UBI4 398 aa12.08□□□□□ -0.48
CSDE1-213ENST00000530784 ZBTB7CA1YPR0 619 aa12.07□□□□□ -0.48
CSDE1-213ENST00000530784 SOX4Q06945 474 aaPredicted RBP12.07□□□□□ -0.48
CSDE1-213ENST00000530784 PDE3AQ14432 1141 aa12.07□□□□□ -0.48
CSDE1-213ENST00000530784 FAM20CQ8IXL6 584 aa12.07□□□□□ -0.48
CSDE1-213ENST00000530784 FAM8A1Q9UBU6 413 aa12.07□□□□□ -0.48
CSDE1-213ENST00000530784 WIZO95785 1651 aa12.06□□□□□ -0.48
CSDE1-213ENST00000530784 GAS2O43903 313 aaKnown RBP12.06□□□□□ -0.48
CSDE1-213ENST00000530784 FBXO24O75426 580 aa12.06□□□□□ -0.48
CSDE1-213ENST00000530784 HP1BP3Q5SSJ5 553 aaPredicted RBP12.06□□□□□ -0.48
CSDE1-213ENST00000530784 STK35Q8TDR2 534 aa12.06□□□□□ -0.48
CSDE1-213ENST00000530784 NECAB3Q96P71 396 aaPredicted RBP12.06□□□□□ -0.48
CSDE1-213ENST00000530784 RAD18Q9NS91 495 aa12.06□□□□□ -0.48
CSDE1-213ENST00000530784 FGD1P98174 961 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms