RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 PPM1HQ9ULR3 514 aa8.37□□□□□ -1.07
CD44-223ENST00000526553 MEGF11A6BM72 1044 aa8.36□□□□□ -1.07
CD44-223ENST00000526553 CYP11A1P05108 521 aa8.36□□□□□ -1.07
CD44-223ENST00000526553 ANKRD24Q8TF21 1146 aa8.36□□□□□ -1.07
CD44-223ENST00000526553 DUSP9Q99956 384 aaKnown RBP8.36□□□□□ -1.07
CD44-223ENST00000526553 TRIM56Q9BRZ2 755 aaKnown RBP8.36□□□□□ -1.07
CD44-223ENST00000526553 RUSC1Q9BVN2 902 aa8.36□□□□□ -1.07
CD44-223ENST00000526553 CEP41Q9BYV8 373 aa8.36□□□□□ -1.07
CD44-223ENST00000526553 FAM8A1Q9UBU6 413 aa8.36□□□□□ -1.07
CD44-223ENST00000526553 GLB1P16278 677 aa8.35□□□□□ -1.07
CD44-223ENST00000526553 AP3B2Q13367 1082 aa8.35□□□□□ -1.07
CD44-223ENST00000526553 HP1BP3Q5SSJ5 553 aaPredicted RBP8.35□□□□□ -1.07
CD44-223ENST00000526553 ANKRD34AQ69YU3 496 aa8.35□□□□□ -1.07
CD44-223ENST00000526553 AKAP2Q9Y2D5 859 aa8.35□□□□□ -1.07
CD44-223ENST00000526553 POU4F3Q15319 338 aa8.34□□□□□ -1.07
CD44-223ENST00000526553 UVSSAQ2YD98 709 aa8.34□□□□□ -1.07
CD44-223ENST00000526553 TP53INP1Q96A56 240 aa8.34□□□□□ -1.07
CD44-223ENST00000526553 TMPRSS13Q9BYE2 586 aa8.34□□□□□ -1.07
CD44-223ENST00000526553 TMEM39AQ9NV64 488 aa8.34□□□□□ -1.07
CD44-223ENST00000526553 GPN3Q9UHW5 284 aaPredicted RBP8.34□□□□□ -1.07
CD44-223ENST00000526553 AK5Q9Y6K8 562 aa8.34□□□□□ -1.07
CD44-223ENST00000526553 USP17L7P0C7H9 530 aa8.33□□□□□ -1.08
CD44-223ENST00000526553 EIF4BP23588 611 aaKnown RBP8.33□□□□□ -1.08
CD44-223ENST00000526553 MAOBP27338 520 aa8.33□□□□□ -1.08
CD44-223ENST00000526553 PPP2R3AQ06190 1150 aa8.33□□□□□ -1.08
CD44-223ENST00000526553 TRIM26Q12899 539 aaPredicted RBP8.33□□□□□ -1.08
CD44-223ENST00000526553 RSPO4Q2I0M5 234 aaPredicted RBP8.33□□□□□ -1.08
CD44-223ENST00000526553 NKAPLQ5M9Q1 402 aa8.33□□□□□ -1.08
CD44-223ENST00000526553 CORO1BQ9BR76 489 aa8.33□□□□□ -1.08
CD44-223ENST00000526553 SUGCTQ9HAC7 445 aa8.33□□□□□ -1.08
CD44-223ENST00000526553 PARP2Q9UGN5 583 aa8.33□□□□□ -1.08
CD44-223ENST00000526553 DLGAP3O95886 979 aa8.32□□□□□ -1.08
CD44-223ENST00000526553 H2AFB1P0C5Y9 115 aa8.32□□□□□ -1.08
CD44-223ENST00000526553 H2AFB2P0C5Z0 115 aa8.32□□□□□ -1.08
CD44-223ENST00000526553 MFAP1P55081 439 aaKnown RBP8.32□□□□□ -1.08
CD44-223ENST00000526553 DAB2P98082 770 aa8.32□□□□□ -1.08
CD44-223ENST00000526553 EXOSC6Q5RKV6 272 aaKnown RBP8.32□□□□□ -1.08
CD44-223ENST00000526553 SMG8Q8ND04 991 aaKnown RBP8.32□□□□□ -1.08
CD44-223ENST00000526553 UBL7Q96S82 380 aaPredicted RBP8.32□□□□□ -1.08
CD44-223ENST00000526553 CEP44Q9C0F1 390 aa8.32□□□□□ -1.08
CD44-223ENST00000526553 CTSBP07858 339 aa8.31□□□□□ -1.08
CD44-223ENST00000526553 FURINP09958 794 aa8.31□□□□□ -1.08
CD44-223ENST00000526553 ZNF157P51786 506 aaPredicted RBP8.31□□□□□ -1.08
CD44-223ENST00000526553 NUTM2GQ5VZR2 741 aa8.31□□□□□ -1.08
CD44-223ENST00000526553 FDX2Q6P4F2 183 aa8.31□□□□□ -1.08
CD44-223ENST00000526553 FAM46AQ96IP4 442 aaKnown RBP8.31□□□□□ -1.08
CD44-223ENST00000526553 CYP4F12Q9HCS2 524 aa8.31□□□□□ -1.08
CD44-223ENST00000526553 RNF19AQ9NV58 838 aa8.31□□□□□ -1.08
CD44-223ENST00000526553 TIAF1O95411 115 aa8.3□□□□□ -1.08
CD44-223ENST00000526553 XPCQ01831 940 aaPredicted RBP8.3□□□□□ -1.08
CD44-223ENST00000526553 PSMD2Q13200 908 aa8.3□□□□□ -1.08
CD44-223ENST00000526553 TMC4Q7Z404 712 aa8.3□□□□□ -1.08
CD44-223ENST00000526553 NECAB3Q96P71 396 aaPredicted RBP8.3□□□□□ -1.08
CD44-223ENST00000526553 K7ELQ4 463 aaPredicted RBP8.29□□□□□ -1.08
CD44-223ENST00000526553 DYRK3O43781 588 aa8.29□□□□□ -1.08
CD44-223ENST00000526553 ECEL1O95672 775 aa8.29□□□□□ -1.08
CD44-223ENST00000526553 PREPP48147 710 aa8.29□□□□□ -1.08
CD44-223ENST00000526553 TPTE2Q6XPS3 522 aa8.29□□□□□ -1.08
CD44-223ENST00000526553 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.29□□□□□ -1.08
CD44-223ENST00000526553 BCL2L13Q9BXK5 485 aa8.29□□□□□ -1.08
CD44-223ENST00000526553 ENC1O14682 589 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 SART1O43290 800 aaKnown RBP8.28□□□□□ -1.08
CD44-223ENST00000526553 GSTP1P09211 210 aaKnown RBP8.28□□□□□ -1.08
CD44-223ENST00000526553 NME2P22392 152 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 ITGAEP38570 1179 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 HNRNPUQ00839 825 aaKnown RBP eCLIP8.28□□□□□ -1.08
CD44-223ENST00000526553 TAGLNQ01995 201 aaKnown RBP8.28□□□□□ -1.08
CD44-223ENST00000526553 PRR23CQ6ZRP0 262 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 PDZD3Q86UT5 571 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 SULF2Q8IWU5 870 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 ARMC10Q8N2F6 343 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 UTP4Q969X6 686 aaKnown RBP8.28□□□□□ -1.08
CD44-223ENST00000526553 MYRFLQ96LU7 910 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 KRT82Q9NSB4 513 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 HIF3AQ9Y2N7 669 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 SYNGAP1Q96PV0 1343 aa8.28□□□□□ -1.08
CD44-223ENST00000526553 ADAM23O75077 832 aa8.27□□□□□ -1.09
CD44-223ENST00000526553 PDE3AQ14432 1141 aa8.27□□□□□ -1.09
CD44-223ENST00000526553 EMILIN2Q9BXX0 1053 aa8.27□□□□□ -1.09
CD44-223ENST00000526553 TTF2Q9UNY4 1162 aaKnown RBP8.27□□□□□ -1.09
CD44-223ENST00000526553 SAMM50Q9Y512 469 aa8.27□□□□□ -1.09
CD44-223ENST00000526553 DHX15O43143 795 aaKnown RBP8.26□□□□□ -1.09
CD44-223ENST00000526553 FBXO24O75426 580 aa8.26□□□□□ -1.09
CD44-223ENST00000526553 ARNTP27540 789 aa8.26□□□□□ -1.09
CD44-223ENST00000526553 ZNF326Q5BKZ1 582 aaKnown RBP8.26□□□□□ -1.09
CD44-223ENST00000526553 SV2BQ7L1I2 683 aa8.26□□□□□ -1.09
CD44-223ENST00000526553 C12orf50Q8NA57 414 aaPredicted RBP8.26□□□□□ -1.09
CD44-223ENST00000526553 GAS2O43903 313 aaKnown RBP8.25□□□□□ -1.09
CD44-223ENST00000526553 SORBS3O60504 671 aa8.25□□□□□ -1.09
CD44-223ENST00000526553 ADH5P11766 374 aa8.25□□□□□ -1.09
CD44-223ENST00000526553 SOX4Q06945 474 aaPredicted RBP8.25□□□□□ -1.09
CD44-223ENST00000526553 STK35Q8TDR2 534 aa8.25□□□□□ -1.09
CD44-223ENST00000526553 GIPC2Q8TF65 315 aa8.25□□□□□ -1.09
CD44-223ENST00000526553 FAM161BQ96MY7 647 aa8.25□□□□□ -1.09
CD44-223ENST00000526553 WDR18Q9BV38 432 aa8.25□□□□□ -1.09
CD44-223ENST00000526553 SEMA6BQ9H3T3 888 aa8.25□□□□□ -1.09
CD44-223ENST00000526553 CCDC86Q9H6F5 360 aaKnown RBP8.25□□□□□ -1.09
CD44-223ENST00000526553 AOC2O75106 756 aa8.24□□□□□ -1.09
CD44-223ENST00000526553 ZNF252P-AS1Q0IIN9 211 aa8.24□□□□□ -1.09
CD44-223ENST00000526553 FAM20CQ8IXL6 584 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms