RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 IQSEC3Q9UPP2 1182 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-201ENST00000526271 PTPN22Q9Y2R2 807 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 ZNF521Q96K83 1311 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 UNCXA6NJT0 531 aa18.11■□□□□ 0.49
CPSF1-201ENST00000526271 ALDH1L1O75891 902 aa18.11■□□□□ 0.49
CPSF1-201ENST00000526271 CCDC57Q2TAC2 916 aa18.11■□□□□ 0.49
CPSF1-201ENST00000526271 RABL6Q3YEC7 729 aaPredicted RBP18.11■□□□□ 0.49
CPSF1-201ENST00000526271 SUPT20HL1Q3ZLR7 823 aa18.11■□□□□ 0.49
CPSF1-201ENST00000526271 ANKRD13AQ8IZ07 590 aa18.11■□□□□ 0.49
CPSF1-201ENST00000526271 OPTNQ96CV9 577 aa18.11■□□□□ 0.49
CPSF1-201ENST00000526271 CEP290O15078 2479 aa18.11■□□□□ 0.49
CPSF1-201ENST00000526271 ZNF316A6NFI3 1004 aaPredicted RBP18.1■□□□□ 0.49
CPSF1-201ENST00000526271 HIBADHP31937 336 aaKnown RBP18.1■□□□□ 0.49
CPSF1-201ENST00000526271 CRKP46108 304 aa18.1■□□□□ 0.49
CPSF1-201ENST00000526271 RBM5P52756 815 aaKnown RBP eCLIP18.1■□□□□ 0.49
CPSF1-201ENST00000526271 CACNB3P54284 484 aa18.1■□□□□ 0.49
CPSF1-201ENST00000526271 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.1■□□□□ 0.49
CPSF1-201ENST00000526271 KLHDC4Q8TBB5 520 aa18.1■□□□□ 0.49
CPSF1-201ENST00000526271 PCDH10Q9P2E7 1040 aa18.1■□□□□ 0.49
CPSF1-201ENST00000526271 SERPINA10Q9UK55 444 aa18.1■□□□□ 0.49
CPSF1-201ENST00000526271 TCP10L2B9ZVM9 353 aa18.09■□□□□ 0.49
CPSF1-201ENST00000526271 IREB2P48200 963 aaKnown RBP18.09■□□□□ 0.49
CPSF1-201ENST00000526271 VGLL4Q14135 290 aa18.09■□□□□ 0.49
CPSF1-201ENST00000526271 SLC4A10Q6U841 1118 aa18.09■□□□□ 0.49
CPSF1-201ENST00000526271 FAM43AQ8N2R8 423 aa18.09■□□□□ 0.49
CPSF1-201ENST00000526271 ARMC5Q96C12 935 aa18.09■□□□□ 0.49
CPSF1-201ENST00000526271 BICC1Q9H694 974 aaKnown RBP18.09■□□□□ 0.49
CPSF1-201ENST00000526271 MYO1BO43795 1136 aa18.08■□□□□ 0.48
CPSF1-201ENST00000526271 SRCIN1Q9C0H9 1055 aa18.08■□□□□ 0.48
CPSF1-201ENST00000526271 C9orf78Q9NZ63 289 aaPredicted RBP18.08■□□□□ 0.48
CPSF1-201ENST00000526271 MYH13Q9UKX3 1938 aa18.08■□□□□ 0.48
CPSF1-201ENST00000526271 EN2P19622 333 aaPredicted RBP18.07■□□□□ 0.48
CPSF1-201ENST00000526271 TAF7LQ5H9L4 462 aa18.07■□□□□ 0.48
CPSF1-201ENST00000526271 MRPL50Q8N5N7 158 aaKnown RBP18.07■□□□□ 0.48
CPSF1-201ENST00000526271 SNCAIPQ9Y6H5 919 aa18.07■□□□□ 0.48
CPSF1-201ENST00000526271 APOBEC3HQ6NTF7 200 aaKnown RBP18.06■□□□□ 0.48
CPSF1-201ENST00000526271 ARHGAP39Q9C0H5 1083 aa18.06■□□□□ 0.48
CPSF1-201ENST00000526271 FGFR2P21802 821 aa18.05■□□□□ 0.48
CPSF1-201ENST00000526271 RFX5P48382 616 aaPredicted RBP18.05■□□□□ 0.48
CPSF1-201ENST00000526271 BCAMP50895 628 aa18.05■□□□□ 0.48
CPSF1-201ENST00000526271 SP3Q02447 781 aa18.05■□□□□ 0.48
CPSF1-201ENST00000526271 ERO1AQ96HE7 468 aa18.05■□□□□ 0.48
CPSF1-201ENST00000526271 EFCC1Q9HA90 598 aa18.05■□□□□ 0.48
CPSF1-201ENST00000526271 SZT2Q5T011 3432 aa18.05■□□□□ 0.48
CPSF1-201ENST00000526271 MROH5Q6ZUA9 1318 aa18.04■□□□□ 0.48
CPSF1-201ENST00000526271 CTGFP29279 349 aa18.04■□□□□ 0.48
CPSF1-201ENST00000526271 MAP3K9P80192 1104 aa18.04■□□□□ 0.48
CPSF1-201ENST00000526271 CHAF1AQ13111 956 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-201ENST00000526271 ZNF333Q96JL9 665 aa18.04■□□□□ 0.48
CPSF1-201ENST00000526271 PTCH2Q9Y6C5 1203 aa18.04■□□□□ 0.48
CPSF1-201ENST00000526271 CCL15-CCL14A0A0B4J2E2 113 aa18.03■□□□□ 0.48
CPSF1-201ENST00000526271 TNFAIP1Q13829 316 aa18.03■□□□□ 0.48
CPSF1-201ENST00000526271 CCL15Q16663 113 aa18.03■□□□□ 0.48
CPSF1-201ENST00000526271 OTUD5Q96G74 571 aa18.03■□□□□ 0.48
CPSF1-201ENST00000526271 USP44Q9H0E7 712 aa18.03■□□□□ 0.48
CPSF1-201ENST00000526271 RANBP2P49792 3224 aaKnown RBP18.02■□□□□ 0.48
CPSF1-201ENST00000526271 SPDYE5A6NIY4 337 aa18.02■□□□□ 0.48
CPSF1-201ENST00000526271 PDE8BO95263 885 aa18.02■□□□□ 0.48
CPSF1-201ENST00000526271 HDLBPQ00341 1268 aaKnown RBP18.02■□□□□ 0.48
CPSF1-201ENST00000526271 ZKSCAN4Q969J2 545 aaPredicted RBP18.02■□□□□ 0.48
CPSF1-201ENST00000526271 TRIOBPQ9H2D6 2365 aa18.02■□□□□ 0.47
CPSF1-201ENST00000526271 TAF1CQ15572 869 aaPredicted RBP18.01■□□□□ 0.47
CPSF1-201ENST00000526271 INTS3Q68E01 1043 aaKnown RBP18.01■□□□□ 0.47
CPSF1-201ENST00000526271 ZDHHC15Q96MV8 337 aa18.01■□□□□ 0.47
CPSF1-201ENST00000526271 BTBD19C9JJ37 291 aa18■□□□□ 0.47
CPSF1-201ENST00000526271 IRF6O14896 467 aa18■□□□□ 0.47
CPSF1-201ENST00000526271 MOGSQ13724 837 aa18■□□□□ 0.47
CPSF1-201ENST00000526271 HABP4Q5JVS0 413 aaKnown RBP18■□□□□ 0.47
CPSF1-201ENST00000526271 METTL24Q5JXM2 366 aa18■□□□□ 0.47
CPSF1-201ENST00000526271 ATG9AQ7Z3C6 839 aa18■□□□□ 0.47
CPSF1-201ENST00000526271 FAM9BQ8IZU0 186 aa18■□□□□ 0.47
CPSF1-201ENST00000526271 SSH1Q8WYL5 1049 aa18■□□□□ 0.47
CPSF1-201ENST00000526271 ADGRA2Q96PE1 1338 aa17.99■□□□□ 0.47
CPSF1-201ENST00000526271 INPP5BP32019 993 aa17.99■□□□□ 0.47
CPSF1-201ENST00000526271 GTF2A2P52657 109 aa17.99■□□□□ 0.47
CPSF1-201ENST00000526271 OTUD7BQ6GQQ9 843 aa17.99■□□□□ 0.47
CPSF1-201ENST00000526271 MRIQ9BWK5 157 aa17.99■□□□□ 0.47
CPSF1-201ENST00000526271 RPAP1Q9BWH6 1393 aaPredicted RBP17.99■□□□□ 0.47
CPSF1-201ENST00000526271 NFIAQ12857 509 aa17.98■□□□□ 0.47
CPSF1-201ENST00000526271 MIGA2Q7L4E1 593 aa17.98■□□□□ 0.47
CPSF1-201ENST00000526271 FAM83AQ86UY5 434 aa17.98■□□□□ 0.47
CPSF1-201ENST00000526271 TEKT1Q969V4 418 aa17.98■□□□□ 0.47
CPSF1-201ENST00000526271 WRNIP1Q96S55 665 aa17.98■□□□□ 0.47
CPSF1-201ENST00000526271 ATRNL1Q5VV63 1379 aa17.97■□□□□ 0.47
CPSF1-201ENST00000526271 ANP32CO43423 234 aa17.97■□□□□ 0.47
CPSF1-201ENST00000526271 SLURP2P0DP57 97 aa17.97■□□□□ 0.47
CPSF1-201ENST00000526271 ERO1BQ86YB8 467 aa17.97■□□□□ 0.47
CPSF1-201ENST00000526271 ZFPM1Q8IX07 1006 aa17.97■□□□□ 0.47
CPSF1-201ENST00000526271 ZFYVE28Q9HCC9 887 aa17.97■□□□□ 0.47
CPSF1-201ENST00000526271 PTPRFP10586 1907 aa17.97■□□□□ 0.47
CPSF1-201ENST00000526271 KIF16BQ96L93 1317 aa17.97■□□□□ 0.47
CPSF1-201ENST00000526271 PHIPQ8WWQ0 1821 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 TLR2O60603 784 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 TNNI2P48788 182 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 DIXDC1Q155Q3 683 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 FKBP1CQ5VVH2 108 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 HHIPL2Q6UWX4 724 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 SH3TC2Q8TF17 1288 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 TBC1D22AQ8WUA7 517 aa17.96■□□□□ 0.47
CPSF1-201ENST00000526271 FAM198AQ9UFP1 575 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms