RNA–Protein interactions for RNA: ENST00000524317.1

SCUBE2-208, Transcript of signal peptide, CUB domain and EGF like domain containing 2, human

TSL 2

Gene SCUBE2, Length 2,322 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCUBE2-208	ENST00000524317	GTF3C6	Q969F1	213 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	GPAA1	O43292	621 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	SLC9C2	Q5TAH2	1124 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	LARP1B	Q659C4	914 aa	Known RBP	13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	ZSCAN25	Q6NSZ9	544 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	SMIM5	Q71RC9	77 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	BRF1	Q92994	677 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	CCDC102A	Q96A19	550 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	CTNNA3	Q9UI47	895 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	ATP6V1D	Q9Y5K8	247 aa		13.78	□□□□□ -0.2
SCUBE2-208	ENST00000524317	FGA	P02671	866 aa		13.77	□□□□□ -0.21
SCUBE2-208	ENST00000524317	TMEM63C	Q9P1W3	806 aa		13.77	□□□□□ -0.21
SCUBE2-208	ENST00000524317	CNPY2	Q9Y2B0	182 aa		13.77	□□□□□ -0.21
SCUBE2-208	ENST00000524317	VPS37C	A5D8V6	355 aa	Predicted RBP	13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	IDH1	O75874	414 aa	Known RBP	13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	ERFE	Q4G0M1	354 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	FAM182B	Q5T319	152 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	AGXT2	Q9BYV1	514 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	GADD45B	O75293	160 aa	Predicted RBP	13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	PDC	P20941	246 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	UBE3C	Q15386	1083 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	IMMT	Q16891	758 aa	Known RBP	13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	RC3H1	Q5TC82	1133 aa	Known RBP	13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	C3orf67	Q6ZVT6	689 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SPATA5	Q8NB90	893 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	MFRP	Q9BY79	579 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	BCL2L12	Q9HB09	334 aa		13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	MYH14	Q7Z406	1995 aa	Known RBP	13.76	□□□□□ -0.21
SCUBE2-208	ENST00000524317	OFD1	O75665	1012 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	CHRND	Q07001	517 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	DMTN	Q08495	405 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SCRN1	Q12765	414 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	RASGRF1	Q13972	1273 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	JAK2	O60674	1132 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	PDE6A	P16499	860 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	HAND2	P61296	217 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	TBC1D9B	Q66K14	1250 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	BICDL1	Q6ZP65	573 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	CDC37L1	Q7L3B6	337 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	CDC5L	Q99459	802 aa	Known RBP	13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	FAM13B	Q9NYF5	915 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	WWC3	Q9ULE0	1092 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	ZNF532	Q9HCE3	1301 aa		13.75	□□□□□ -0.21
SCUBE2-208	ENST00000524317	ATRN	O75882	1429 aa		13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	TCRBV5S4A2T	A0A5A2	114 aa		13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	PFKFB2	O60825	505 aa		13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	RPS6KA4	O75676	772 aa		13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	DNM1	Q05193	864 aa	Known RBP	13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SF3B3	Q15393	1217 aa	Known RBP	13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	CHST3	Q7LGC8	479 aa		13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	PATL2	C9JE40	543 aa	Known RBP	13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	BCAM	P50895	628 aa		13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	APOBR	Q0VD83	1088 aa		13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	MRRF	Q96E11	262 aa	Known RBP	13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	GJD4	Q96KN9	370 aa	Predicted RBP	13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	NARF	Q9UHQ1	456 aa		13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	CCNL1	Q9UK58	526 aa	Predicted RBP	13.74	□□□□□ -0.21
SCUBE2-208	ENST00000524317	COL5A3	P25940	1745 aa	Predicted RBP	13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	RBM47	A0AV96	593 aa	Known RBP	13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	GNPAT	O15228	680 aa		13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	FBXL16	Q8N461	479 aa		13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SRP68	Q9UHB9	627 aa	Known RBP	13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	ZNF831	Q5JPB2	1677 aa		13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	FIBP	O43427	364 aa		13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SKIV2L	Q15477	1246 aa	Known RBP	13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	AMHR2	Q16671	573 aa		13.73	□□□□□ -0.21
SCUBE2-208	ENST00000524317	ZNF213	O14771	459 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SLC10A5	Q5PT55	438 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	MEX3C	Q5U5Q3	659 aa	Known RBP	13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	FERMT3	Q86UX7	667 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	AMIGO3	Q86WK7	504 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	ANKRD18A	Q8IVF6	992 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SMARCC2	Q8TAQ2	1214 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	LLPH	Q9BRT6	129 aa	Known RBP	13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	MYH3	P11055	1940 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	THSD7A	Q9UPZ6	1657 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SYCE3	A1L190	88 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	UBE2H	P62256	183 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	MAP3K12	Q12852	859 aa		13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	BSDC1	Q9NW68	430 aa	Predicted RBP	13.72	□□□□□ -0.21
SCUBE2-208	ENST00000524317	CTDNEP1	O95476	244 aa		13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	PDIA3	P30101	505 aa	Known RBP	13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	MAGEB6	Q8N7X4	407 aa		13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	NSUN7	Q8NE18	718 aa	Known RBP	13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	AIDA	Q96BJ3	306 aa		13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	ZNF274	Q96GC6	653 aa	Predicted RBP	13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	STRBP	Q96SI9	672 aa	Known RBP	13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	SETDB2	Q96T68	719 aa		13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	RTCB	Q9Y3I0	505 aa	Known RBP	13.71	□□□□□ -0.21
SCUBE2-208	ENST00000524317	ZPR1	O75312	459 aa		13.7	□□□□□ -0.22
SCUBE2-208	ENST00000524317	COL4A1	P02462	1669 aa		13.7	□□□□□ -0.22
SCUBE2-208	ENST00000524317	EVC	P57679	992 aa		13.7	□□□□□ -0.22
SCUBE2-208	ENST00000524317	CSPP1	Q1MSJ5	1256 aa		13.7	□□□□□ -0.22
SCUBE2-208	ENST00000524317	LRSAM1	Q6UWE0	723 aa		13.7	□□□□□ -0.22
SCUBE2-208	ENST00000524317	DDX60	Q8IY21	1712 aa	Known RBP	13.7	□□□□□ -0.22
SCUBE2-208	ENST00000524317	NCOA7	Q8NI08	942 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms