RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 PIGBQ92521 554 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 C16orf45Q96MC5 204 aaPredicted RBP12.9□□□□□ -0.34
HDAC9-228ENST00000524023 ARID3AQ99856 593 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 CCDC94Q9BW85 323 aaPredicted RBP12.9□□□□□ -0.34
HDAC9-228ENST00000524023 GREM2Q9H772 168 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 MYH3P11055 1940 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 SPTLC2O15270 562 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 NEMFO60524 1076 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 STARD3NLO95772 234 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 ADD2P35612 726 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 HLFQ16534 295 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 NLRP10Q86W26 655 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 AOPEPQ8N6M6 819 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 ZNF512BQ96KM6 892 aaPredicted RBP12.9□□□□□ -0.34
HDAC9-228ENST00000524023 NBPF3Q9H094 633 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 NAT10Q9H0A0 1025 aaKnown RBP12.9□□□□□ -0.34
HDAC9-228ENST00000524023 GJB4Q9NTQ9 266 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 ATRNO75882 1429 aa12.89□□□□□ -0.35
HDAC9-228ENST00000524023 KIF28PB7ZC32 967 aa12.89□□□□□ -0.35
HDAC9-228ENST00000524023 TNNT1P13805 278 aa12.89□□□□□ -0.35
HDAC9-228ENST00000524023 GPTP24298 496 aa12.89□□□□□ -0.35
HDAC9-228ENST00000524023 KIF23Q02241 960 aaPredicted RBP12.89□□□□□ -0.35
HDAC9-228ENST00000524023 SLC9C2Q5TAH2 1124 aa12.89□□□□□ -0.35
HDAC9-228ENST00000524023 KIAA1468Q9P260 1216 aa12.89□□□□□ -0.35
HDAC9-228ENST00000524023 NEDD4P46934 1319 aa12.89□□□□□ -0.35
HDAC9-228ENST00000524023 ANKRD18BA2A2Z9 1011 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 CTSWP56202 376 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 RBM6P78332 1123 aaKnown RBP12.88□□□□□ -0.35
HDAC9-228ENST00000524023 TRDNQ13061 729 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 ARID5BQ14865 1188 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 SYNE3Q6ZMZ3 975 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 VGLL2Q8N8G2 317 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 RGS22Q8NE09 1264 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 CNNM1Q9NRU3 951 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 ITGB4P16144 1822 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.88□□□□□ -0.35
HDAC9-228ENST00000524023 ANKRD36CQ5JPF3 1778 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 SMTNL1A8MU46 457 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 TTF1Q15361 905 aaPredicted RBP12.88□□□□□ -0.35
HDAC9-228ENST00000524023 TPD52L1Q16890 204 aaPredicted RBP12.88□□□□□ -0.35
HDAC9-228ENST00000524023 ANO1Q5XXA6 986 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 TBC1D10CQ8IV04 446 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 FBXW7Q969H0 707 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 ZMYND15Q9H091 742 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 DENND2AQ9ULE3 1009 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 ANGEL1Q9UNK9 670 aaKnown RBP12.88□□□□□ -0.35
HDAC9-228ENST00000524023 ZMYM6O95789 1325 aa12.88□□□□□ -0.35
HDAC9-228ENST00000524023 UBE3CQ15386 1083 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 AXDND1Q5T1B0 1012 aaPredicted RBP12.87□□□□□ -0.35
HDAC9-228ENST00000524023 CYB5R4Q7L1T6 521 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 NKX2-3Q8TAU0 364 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 ANKRD7Q92527 254 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 BPIFA3Q9BQP9 254 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 PIH1D3Q9NQM4 214 aaKnown RBP12.87□□□□□ -0.35
HDAC9-228ENST00000524023 SLAIN2Q9P270 581 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 IRS4O14654 1257 aaPredicted RBP12.87□□□□□ -0.35
HDAC9-228ENST00000524023 ZNF202O95125 648 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 HSPA2P54652 639 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 DPCR1Q3MIW9 517 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 FILIP1Q7Z7B0 1213 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 PAXBP1Q9Y5B6 917 aa12.87□□□□□ -0.35
HDAC9-228ENST00000524023 NUP98P52948 1817 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 CCDC69A6NI79 296 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 SH2B2O14492 632 aaPredicted RBP12.86□□□□□ -0.35
HDAC9-228ENST00000524023 IDH1O75874 414 aaKnown RBP12.86□□□□□ -0.35
HDAC9-228ENST00000524023 PDE8BO95263 885 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 SKILP12757 684 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 CMA1P23946 247 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 METAP2P50579 478 aaKnown RBP eCLIP12.86□□□□□ -0.35
HDAC9-228ENST00000524023 CCZ1BP86790 482 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 CCZ1P86791 482 aaPredicted RBP12.86□□□□□ -0.35
HDAC9-228ENST00000524023 ZRSR1Q15695 479 aaKnown RBP12.86□□□□□ -0.35
HDAC9-228ENST00000524023 ZNF532Q9HCE3 1301 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 LRP6O75581 1613 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 APPP05067 770 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 SLC3A2P08195 630 aaKnown RBP12.86□□□□□ -0.35
HDAC9-228ENST00000524023 PFKFB1P16118 471 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 ARID4AP29374 1257 aaPredicted RBP12.86□□□□□ -0.35
HDAC9-228ENST00000524023 PHKA1P46020 1223 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 SLC39A14Q15043 492 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 CCDC102BQ68D86 513 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 NBPF11Q86T75 865 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 AIFM3Q96NN9 605 aa12.86□□□□□ -0.35
HDAC9-228ENST00000524023 TRMT112Q9UI30 125 aaKnown RBP12.86□□□□□ -0.35
HDAC9-228ENST00000524023 TCRBV5S4A2TA0A5A2 114 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 USP27XA6NNY8 438 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 WDHD1O75717 1129 aaPredicted RBP12.85□□□□□ -0.35
HDAC9-228ENST00000524023 CDKL5O76039 1030 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 CYP19A1P11511 503 aaPredicted RBP12.85□□□□□ -0.35
HDAC9-228ENST00000524023 PDE6AP16499 860 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 NLRP12P59046 1061 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 APOA5Q6Q788 366 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 PDCL2Q8N4E4 241 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 SLC4A9Q96Q91 983 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 ALG1Q9BT22 464 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 ECM29Q5VYK3 1845 aa12.85□□□□□ -0.35
HDAC9-228ENST00000524023 KAT6BQ8WYB5 2073 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 MROH7-TTC4A0A0A0MT08 1334 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 B4E1Z4 1266 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 PDE8AO60658 829 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms