RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 TPM3P06753 285 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 RTN1Q16799 776 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 STOX1Q6ZVD7 989 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 PDILTQ8N807 584 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 USP28Q96RU2 1077 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 PIH1D3Q9NQM4 214 aaKnown RBP11.79□□□□□ -0.52
MCF2-209ENST00000520602 ZNF609O15014 1411 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 SPTLC2O15270 562 aa11.79□□□□□ -0.52
MCF2-209ENST00000520602 MRPS27Q92552 414 aaKnown RBP11.79□□□□□ -0.52
MCF2-209ENST00000520602 CCNL1Q9UK58 526 aaPredicted RBP11.79□□□□□ -0.52
MCF2-209ENST00000520602 CTAGE5O15320 804 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 NR1I2O75469 434 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 CHRNDQ07001 517 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 TRIM28Q13263 835 aaKnown RBP11.78□□□□□ -0.52
MCF2-209ENST00000520602 NSUN7Q8NE18 718 aaKnown RBP11.78□□□□□ -0.52
MCF2-209ENST00000520602 CNNM2Q9H8M5 875 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 MKNK2Q9HBH9 465 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 NWD1Q149M9 1564 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 NALCNQ8IZF0 1738 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 MARCH6O60337 910 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 RPGRQ92834 1020 aaKnown RBP11.78□□□□□ -0.52
MCF2-209ENST00000520602 ZNF274Q96GC6 653 aaPredicted RBP11.78□□□□□ -0.52
MCF2-209ENST00000520602 ERVV-1B6SEH8 477 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 SERPINC1P01008 464 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 CATIPQ7Z7H3 387 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 ESR2Q92731 530 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 CLIP2Q9UDT6 1046 aa11.78□□□□□ -0.52
MCF2-209ENST00000520602 DCCP43146 1447 aa11.77□□□□□ -0.52
MCF2-209ENST00000520602 CASP7P55210 303 aa11.77□□□□□ -0.52
MCF2-209ENST00000520602 CTCFLQ8NI51 663 aaPredicted RBP11.77□□□□□ -0.52
MCF2-209ENST00000520602 PPP1R9BQ96SB3 815 aa11.77□□□□□ -0.52
MCF2-209ENST00000520602 TSPY2A6NKD2 308 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 C6orf229H3BNL8 230 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 ADD2P35612 726 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 STX1AQ16623 288 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 KCNG4Q8TDN1 519 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 SDR42E1Q8WUS8 393 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 LTN1O94822 1766 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 ATP2B2Q01814 1243 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 IFNL3Q8IZI9 196 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 CMTR1Q8N1G2 835 aaKnown RBP11.77□□□□□ -0.53
MCF2-209ENST00000520602 INCENPQ9NQS7 918 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 GJB4Q9NTQ9 266 aa11.77□□□□□ -0.53
MCF2-209ENST00000520602 RPAP1Q9BWH6 1393 aaPredicted RBP11.77□□□□□ -0.53
MCF2-209ENST00000520602 PRKAB2O43741 272 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 USPL1Q5W0Q7 1092 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 HOMER1Q86YM7 354 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 MED23Q9ULK4 1368 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 RIPOR2Q9Y4F9 1068 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.76□□□□□ -0.53
MCF2-209ENST00000520602 UQCRHLA0A096LP55 91 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 PATL2C9JE40 543 aaKnown RBP11.76□□□□□ -0.53
MCF2-209ENST00000520602 UQCRHP07919 91 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 GNAT2P19087 354 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 RASGRF1Q13972 1273 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 COL9A3Q14050 684 aaPredicted RBP11.76□□□□□ -0.53
MCF2-209ENST00000520602 CCDC186Q7Z3E2 898 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 CNNM3Q8NE01 707 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 SYKP43405 635 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 UBE3CQ15386 1083 aa11.76□□□□□ -0.53
MCF2-209ENST00000520602 IFIT1BQ5T764 474 aaKnown RBP11.76□□□□□ -0.53
MCF2-209ENST00000520602 KDM4FA0A1W2PPD8 638 aa11.75□□□□□ -0.53
MCF2-209ENST00000520602 ERFEQ4G0M1 354 aa11.75□□□□□ -0.53
MCF2-209ENST00000520602 TMEM87BQ96K49 555 aa11.75□□□□□ -0.53
MCF2-209ENST00000520602 CRNKL1Q9BZJ0 848 aaKnown RBP11.75□□□□□ -0.53
MCF2-209ENST00000520602 NYXQ9GZU5 481 aa11.75□□□□□ -0.53
MCF2-209ENST00000520602 hCG_1642624A0A1W2PR95 340 aa11.75□□□□□ -0.53
MCF2-209ENST00000520602 RPS8P62241 208 aaKnown RBP11.75□□□□□ -0.53
MCF2-209ENST00000520602 C17orf53Q8N3J3 647 aaPredicted RBP11.75□□□□□ -0.53
MCF2-209ENST00000520602 CLSTN2Q9H4D0 955 aa11.75□□□□□ -0.53
MCF2-209ENST00000520602 USP21Q9UK80 565 aa11.75□□□□□ -0.53
MCF2-209ENST00000520602 NOL7Q9UMY1 257 aaKnown RBP11.75□□□□□ -0.53
MCF2-209ENST00000520602 HIBADHP31937 336 aaKnown RBP11.74□□□□□ -0.53
MCF2-209ENST00000520602 HSP90AA4PQ58FG1 418 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 AKNAD1Q5T1N1 836 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 TMTC2Q8N394 836 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 AATFQ9NY61 560 aaKnown RBP eCLIP11.74□□□□□ -0.53
MCF2-209ENST00000520602 PALLDQ8WX93 1383 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 A0A087WWV3 80 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 FAM160A1Q05DH4 1040 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 TSGA10IPQ3SY00 556 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 KRT40Q6A162 431 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 ZNF444Q8N0Y2 327 aaPredicted RBP11.74□□□□□ -0.53
MCF2-209ENST00000520602 AOPEPQ8N6M6 819 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 CBX8Q9HC52 389 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 MCM9Q9NXL9 1143 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 STX8Q9UNK0 236 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 CSF1RP07333 972 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 TPM2P07951 284 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 HS1BP3Q53T59 392 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 TRAPPC3LQ5T215 181 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 LRP10Q7Z4F1 713 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 BRAPQ7Z569 592 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 AIFM3Q96NN9 605 aa11.74□□□□□ -0.53
MCF2-209ENST00000520602 SRP68Q9UHB9 627 aaKnown RBP11.74□□□□□ -0.53
MCF2-209ENST00000520602 CHD2O14647 1828 aaKnown RBP11.74□□□□□ -0.53
MCF2-209ENST00000520602 NLRP5P59047 1200 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 ANO1Q5XXA6 986 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 KLHL10Q6JEL2 608 aa11.73□□□□□ -0.53
MCF2-209ENST00000520602 SAMD1Q6SPF0 538 aaPredicted RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms