RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 MEIS3Q99687 375 aa21.8■■□□□ 1.08
DDX41-217ENST00000515562 ZNF70Q9UC06 446 aaPredicted RBP21.8■■□□□ 1.08
DDX41-217ENST00000515562 SUGT1Q9Y2Z0 365 aa21.8■■□□□ 1.08
DDX41-217ENST00000515562 GNAI3P08754 354 aa21.79■■□□□ 1.08
DDX41-217ENST00000515562 TEKT1Q969V4 418 aa21.79■■□□□ 1.08
DDX41-217ENST00000515562 MCOLN1Q9GZU1 580 aa21.79■■□□□ 1.08
DDX41-217ENST00000515562 SIL1Q9H173 461 aa21.79■■□□□ 1.08
DDX41-217ENST00000515562 IL15P40933 162 aaPredicted RBP21.78■■□□□ 1.08
DDX41-217ENST00000515562 TDRD3Q9H7E2 651 aaKnown RBP21.78■■□□□ 1.08
DDX41-217ENST00000515562 CEP126Q9P2H0 1117 aa21.78■■□□□ 1.08
DDX41-217ENST00000515562 LAMB1P07942 1786 aa21.77■■□□□ 1.08
DDX41-217ENST00000515562 IREB2P48200 963 aaKnown RBP21.77■■□□□ 1.08
DDX41-217ENST00000515562 TM4SF4P48230 202 aa21.77■■□□□ 1.08
DDX41-217ENST00000515562 TNNI2P48788 182 aa21.77■■□□□ 1.08
DDX41-217ENST00000515562 DGKZQ13574 1117 aa21.77■■□□□ 1.08
DDX41-217ENST00000515562 GRIK5Q16478 980 aa21.77■■□□□ 1.08
DDX41-217ENST00000515562 ATP2B3Q16720 1220 aa21.77■■□□□ 1.08
DDX41-217ENST00000515562 NBPF12Q5TAG4 269 aaPredicted RBP21.77■■□□□ 1.08
DDX41-217ENST00000515562 SPRYD7Q5W111 196 aa21.77■■□□□ 1.08
DDX41-217ENST00000515562 FZD1Q9UP38 647 aa21.77■■□□□ 1.08
DDX41-217ENST00000515562 ZBTB48P10074 688 aaPredicted RBP21.76■■□□□ 1.07
DDX41-217ENST00000515562 MKRN3Q13064 507 aaKnown RBP21.76■■□□□ 1.07
DDX41-217ENST00000515562 DIEXFQ68CQ4 756 aaKnown RBP21.76■■□□□ 1.07
DDX41-217ENST00000515562 WDR66Q8TBY9 1149 aa21.76■■□□□ 1.07
DDX41-217ENST00000515562 SLC10A4Q96EP9 437 aa21.76■■□□□ 1.07
DDX41-217ENST00000515562 MRIQ9BWK5 157 aa21.76■■□□□ 1.07
DDX41-217ENST00000515562 COPRSQ9NQ92 184 aa21.76■■□□□ 1.07
DDX41-217ENST00000515562 TRIM27P14373 513 aa21.75■■□□□ 1.07
DDX41-217ENST00000515562 ATF7IPQ6VMQ6 1270 aa21.75■■□□□ 1.07
DDX41-217ENST00000515562 ZDHHC15Q96MV8 337 aa21.75■■□□□ 1.07
DDX41-217ENST00000515562 GNL3LQ9NVN8 582 aaKnown RBP21.75■■□□□ 1.07
DDX41-217ENST00000515562 OTOFQ9HC10 1997 aa21.74■■□□□ 1.07
DDX41-217ENST00000515562 HNRNPUQ00839 825 aaKnown RBP eCLIP21.74■■□□□ 1.07
DDX41-217ENST00000515562 MIER1Q8N108 512 aa21.74■■□□□ 1.07
DDX41-217ENST00000515562 FRAT1Q92837 279 aaPredicted RBP21.74■■□□□ 1.07
DDX41-217ENST00000515562 TMOD2Q9NZR1 351 aa21.74■■□□□ 1.07
DDX41-217ENST00000515562 MANSC4A6NHS7 340 aaPredicted RBP21.73■■□□□ 1.07
DDX41-217ENST00000515562 CCDC85CA6NKD9 419 aa21.73■■□□□ 1.07
DDX41-217ENST00000515562 TCP10L2B9ZVM9 353 aa21.73■■□□□ 1.07
DDX41-217ENST00000515562 MTX1Q13505 466 aa21.73■■□□□ 1.07
DDX41-217ENST00000515562 ANKRD13AQ8IZ07 590 aa21.73■■□□□ 1.07
DDX41-217ENST00000515562 CLMNQ96JQ2 1002 aa21.73■■□□□ 1.07
DDX41-217ENST00000515562 TEPSINQ96N21 525 aa21.73■■□□□ 1.07
DDX41-217ENST00000515562 PA2G4Q9UQ80 394 aaKnown RBP21.73■■□□□ 1.07
DDX41-217ENST00000515562 SEMA3EO15041 775 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 SRGAP3O43295 1099 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 BCAR3O75815 825 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 ALDH1A1P00352 501 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 INHBEP58166 350 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 NOM1Q5C9Z4 860 aaKnown RBP21.72■■□□□ 1.07
DDX41-217ENST00000515562 HHIPL2Q6UWX4 724 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 WNK4Q96J92 1243 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 CFHR5Q9BXR6 569 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 TMEM39BQ9GZU3 492 aa21.72■■□□□ 1.07
DDX41-217ENST00000515562 USP2O75604 605 aaPredicted RBP21.71■■□□□ 1.07
DDX41-217ENST00000515562 FKBP1CQ5VVH2 108 aa21.71■■□□□ 1.07
DDX41-217ENST00000515562 CTU1Q7Z7A3 348 aaKnown RBP21.71■■□□□ 1.07
DDX41-217ENST00000515562 ZBTB22O15209 634 aa21.7■■□□□ 1.06
DDX41-217ENST00000515562 TBC1D8O95759 1140 aa21.7■■□□□ 1.06
DDX41-217ENST00000515562 APOBEC3HQ6NTF7 200 aaKnown RBP21.7■■□□□ 1.06
DDX41-217ENST00000515562 FAM83AQ86UY5 434 aa21.7■■□□□ 1.06
DDX41-217ENST00000515562 DENND2AQ9ULE3 1009 aa21.7■■□□□ 1.06
DDX41-217ENST00000515562 SALL1Q9NSC2 1324 aa21.7■■□□□ 1.06
DDX41-217ENST00000515562 RPAP1Q9BWH6 1393 aaPredicted RBP21.7■■□□□ 1.06
DDX41-217ENST00000515562 GNAI2P04899 355 aa21.69■■□□□ 1.06
DDX41-217ENST00000515562 ZKSCAN2Q63HK3 967 aa21.69■■□□□ 1.06
DDX41-217ENST00000515562 CDAN1Q8IWY9 1227 aa21.69■■□□□ 1.06
DDX41-217ENST00000515562 HOOK2Q96ED9 719 aa21.69■■□□□ 1.06
DDX41-217ENST00000515562 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.69■■□□□ 1.06
DDX41-217ENST00000515562 PHKA1P46020 1223 aa21.68■■□□□ 1.06
DDX41-217ENST00000515562 CACNB3P54284 484 aa21.68■■□□□ 1.06
DDX41-217ENST00000515562 ZNF296Q8WUU4 475 aaPredicted RBP21.68■■□□□ 1.06
DDX41-217ENST00000515562 CLUAP1Q96AJ1 413 aa21.68■■□□□ 1.06
DDX41-217ENST00000515562 AKAP2Q9Y2D5 859 aa21.68■■□□□ 1.06
DDX41-217ENST00000515562 GPR25O00155 361 aa21.67■■□□□ 1.06
DDX41-217ENST00000515562 LDHBP07195 334 aaKnown RBP21.67■■□□□ 1.06
DDX41-217ENST00000515562 CCDC102BQ68D86 513 aa21.67■■□□□ 1.06
DDX41-217ENST00000515562 IFNL1Q8IU54 200 aa21.67■■□□□ 1.06
DDX41-217ENST00000515562 ZGPATQ8N5A5 531 aaKnown RBP21.67■■□□□ 1.06
DDX41-217ENST00000515562 TNNQ9UQP3 1299 aa21.67■■□□□ 1.06
DDX41-217ENST00000515562 PDS5AQ29RF7 1337 aaKnown RBP21.66■■□□□ 1.06
DDX41-217ENST00000515562 PRDX5P30044 214 aa21.66■■□□□ 1.06
DDX41-217ENST00000515562 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.66■■□□□ 1.06
DDX41-217ENST00000515562 ELP3Q9H9T3 547 aa21.66■■□□□ 1.06
DDX41-217ENST00000515562 CSADQ9Y600 493 aa21.66■■□□□ 1.06
DDX41-217ENST00000515562 ADORA1P30542 326 aa21.65■■□□□ 1.06
DDX41-217ENST00000515562 MVPQ14764 893 aaKnown RBP21.65■■□□□ 1.06
DDX41-217ENST00000515562 PKN2Q16513 984 aaKnown RBP21.65■■□□□ 1.06
DDX41-217ENST00000515562 OTUD7BQ6GQQ9 843 aa21.65■■□□□ 1.06
DDX41-217ENST00000515562 OPTNQ96CV9 577 aa21.65■■□□□ 1.06
DDX41-217ENST00000515562 DAGLAQ9Y4D2 1042 aa21.65■■□□□ 1.06
DDX41-217ENST00000515562 ZBED9Q6R2W3 1325 aa21.64■■□□□ 1.05
DDX41-217ENST00000515562 A0A1B0GUL7 405 aa21.64■■□□□ 1.05
DDX41-217ENST00000515562 GJA5P36382 358 aa21.64■■□□□ 1.05
DDX41-217ENST00000515562 MAP3K9P80192 1104 aa21.64■■□□□ 1.05
DDX41-217ENST00000515562 TFCP2Q12800 502 aa21.64■■□□□ 1.05
DDX41-217ENST00000515562 VGLL4Q14135 290 aa21.64■■□□□ 1.05
DDX41-217ENST00000515562 DIXDC1Q155Q3 683 aa21.64■■□□□ 1.05
DDX41-217ENST00000515562 DCAF15Q66K64 600 aa21.64■■□□□ 1.05
DDX41-217ENST00000515562 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms