RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CDC5LQ99459 802 aaKnown RBP17.36■□□□□ 0.37
NUP54-217ENST00000514987 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.36■□□□□ 0.37
NUP54-217ENST00000514987 ORC3Q9UBD5 711 aaPredicted RBP17.36■□□□□ 0.37
NUP54-217ENST00000514987 HPS5Q9UPZ3 1129 aa17.36■□□□□ 0.37
NUP54-217ENST00000514987 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.36■□□□□ 0.379e-6■□□□□ 11.3
NUP54-217ENST00000514987 CLEC4GQ6UXB4 293 aa17.35■□□□□ 0.37
NUP54-217ENST00000514987 MARCH10Q8NA82 808 aaPredicted RBP17.35■□□□□ 0.37
NUP54-217ENST00000514987 FBXO18Q8NFZ0 1043 aa17.35■□□□□ 0.37
NUP54-217ENST00000514987 USP28Q96RU2 1077 aa17.35■□□□□ 0.37
NUP54-217ENST00000514987 CNNM2Q9H8M5 875 aa17.35■□□□□ 0.37
NUP54-217ENST00000514987 SLIT2O94813 1529 aa17.35■□□□□ 0.37
NUP54-217ENST00000514987 A0A1W2PQ27 194 aa17.34■□□□□ 0.37
NUP54-217ENST00000514987 A0A1W2PQ64 194 aa17.34■□□□□ 0.37
NUP54-217ENST00000514987 A0A1W2PQD8 194 aa17.34■□□□□ 0.37
NUP54-217ENST00000514987 YEATS4O95619 227 aa17.34■□□□□ 0.37
NUP54-217ENST00000514987 NTSR2O95665 410 aa17.34■□□□□ 0.37
NUP54-217ENST00000514987 FAM160A1Q05DH4 1040 aa17.34■□□□□ 0.37
NUP54-217ENST00000514987 CCAR1Q8IX12 1150 aaKnown RBP17.34■□□□□ 0.37
NUP54-217ENST00000514987 KCNG4Q8TDN1 519 aa17.34■□□□□ 0.37
NUP54-217ENST00000514987 ANO8Q9HCE9 1232 aaPredicted RBP17.34■□□□□ 0.37
NUP54-217ENST00000514987 SH2B2O14492 632 aaPredicted RBP17.33■□□□□ 0.37
NUP54-217ENST00000514987 KINO60870 393 aaKnown RBP17.33■□□□□ 0.37
NUP54-217ENST00000514987 ADAMTS2O95450 1211 aa17.33■□□□□ 0.37
NUP54-217ENST00000514987 ANO6Q4KMQ2 910 aa17.33■□□□□ 0.37
NUP54-217ENST00000514987 CKAP2LQ8IYA6 745 aa17.33■□□□□ 0.37
NUP54-217ENST00000514987 MTA3Q9BTC8 594 aa17.33■□□□□ 0.37
NUP54-217ENST00000514987 NACAP1Q9BZK3 213 aa17.33■□□□□ 0.37
NUP54-217ENST00000514987 WWC3Q9ULE0 1092 aa17.33■□□□□ 0.37
NUP54-217ENST00000514987 NIP7Q9Y221 180 aaKnown RBP eCLIP17.33■□□□□ 0.37
NUP54-217ENST00000514987 C4AP0C0L4 1744 aa17.33■□□□□ 0.36
NUP54-217ENST00000514987 C4BP0C0L5 1744 aa17.33■□□□□ 0.36
NUP54-217ENST00000514987 PNPLA7Q6ZV29 1317 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 ITPK1Q13572 414 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 ADALQ6DHV7 355 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 TDRD7Q8NHU6 1098 aaKnown RBP17.32■□□□□ 0.36
NUP54-217ENST00000514987 KRT23Q9C075 422 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 NBPF3Q9H094 633 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 NAPBQ9H115 298 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 GPHNQ9NQX3 736 aaPredicted RBP17.32■□□□□ 0.36
NUP54-217ENST00000514987 POLR3EQ9NVU0 708 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 BCORQ6W2J9 1755 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 MYO5AQ9Y4I1 1855 aaKnown RBP17.32■□□□□ 0.36
NUP54-217ENST00000514987 TIAM2Q8IVF5 1701 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 LIFRP42702 1097 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 ME1P48163 572 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 METAP2P50579 478 aaKnown RBP eCLIP17.32■□□□□ 0.36
NUP54-217ENST00000514987 FOSBP53539 338 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 CEBPZQ03701 1054 aaKnown RBP17.32■□□□□ 0.36
NUP54-217ENST00000514987 RASGRF1Q13972 1273 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.32■□□□□ 0.36
NUP54-217ENST00000514987 ILDR1Q86SU0 546 aaPredicted RBP17.32■□□□□ 0.36
NUP54-217ENST00000514987 SGMS1Q86VZ5 419 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 TBC1D10CQ8IV04 446 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 HELBQ8NG08 1087 aaPredicted RBP17.32■□□□□ 0.36
NUP54-217ENST00000514987 ACSBG1Q96GR2 724 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 CBX8Q9HC52 389 aa17.32■□□□□ 0.36
NUP54-217ENST00000514987 COL5A3P25940 1745 aaPredicted RBP17.31■□□□□ 0.36
NUP54-217ENST00000514987 ZNF165P49910 485 aa17.31■□□□□ 0.36
NUP54-217ENST00000514987 PLCB2Q00722 1185 aa17.31■□□□□ 0.36
NUP54-217ENST00000514987 GUCY1B3Q02153 619 aa17.31■□□□□ 0.36
NUP54-217ENST00000514987 STX1AQ16623 288 aa17.31■□□□□ 0.36
NUP54-217ENST00000514987 SYNE3Q6ZMZ3 975 aa17.31■□□□□ 0.36
NUP54-217ENST00000514987 IFNL3Q8IZI9 196 aa17.31■□□□□ 0.36
NUP54-217ENST00000514987 MAGEB6Q8N7X4 407 aa17.31■□□□□ 0.36
NUP54-217ENST00000514987 PIBF1Q8WXW3 757 aa17.31■□□□□ 0.36
NUP54-217ENST00000514987 MRPS27Q92552 414 aaKnown RBP17.31■□□□□ 0.36
NUP54-217ENST00000514987 LTBP4Q8N2S1 1624 aa17.3■□□□□ 0.36
NUP54-217ENST00000514987 A0A0G2JS52 829 aa17.3■□□□□ 0.36
NUP54-217ENST00000514987 MBD4O95243 580 aa17.3■□□□□ 0.36
NUP54-217ENST00000514987 STK38Q15208 465 aa17.3■□□□□ 0.36
NUP54-217ENST00000514987 SF3A1Q15459 793 aaKnown RBP17.3■□□□□ 0.36
NUP54-217ENST00000514987 CYB5R4Q7L1T6 521 aa17.3■□□□□ 0.36
NUP54-217ENST00000514987 FSIP1Q8NA03 581 aa17.3■□□□□ 0.36
NUP54-217ENST00000514987 ENGASEQ8NFI3 743 aa17.3■□□□□ 0.36
NUP54-217ENST00000514987 SEC31BQ9NQW1 1179 aa17.3■□□□□ 0.36
NUP54-217ENST00000514987 GNL3LQ9NVN8 582 aaKnown RBP17.3■□□□□ 0.36
NUP54-217ENST00000514987 MYH14Q7Z406 1995 aaKnown RBP17.29■□□□□ 0.36
NUP54-217ENST00000514987 CHD4Q14839 1912 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 ZBTB43O43298 467 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 MYSM1Q5VVJ2 828 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 APOA5Q6Q788 366 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 LINC00301Q8NCQ3 95 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 IGDCC4Q8TDY8 1250 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 ANO10Q9NW15 660 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 NID2Q14112 1375 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 STK36Q9NRP7 1315 aa17.29■□□□□ 0.36
NUP54-217ENST00000514987 FAM177BA6PVY3 158 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 B4E1Z4 1266 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 CHRNDQ07001 517 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 SNW1Q13573 536 aaKnown RBP17.28■□□□□ 0.36
NUP54-217ENST00000514987 SART3Q15020 963 aaKnown RBP17.28■□□□□ 0.36
NUP54-217ENST00000514987 SF3B3Q15393 1217 aaKnown RBP17.28■□□□□ 0.36
NUP54-217ENST00000514987 TMEM67Q5HYA8 995 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 AKNAD1Q5T1N1 836 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 LUZP1Q86V48 1076 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 TMTC2Q8N394 836 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 WASF1Q92558 559 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 RNF41Q9H4P4 317 aaPredicted RBP17.28■□□□□ 0.36
NUP54-217ENST00000514987 GOLGA6L19H0YKK7 550 aa17.28■□□□□ 0.36
NUP54-217ENST00000514987 SPTLC2O15270 562 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms