RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GNAQP50148 359 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 PICALMQ13492 652 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 ATL3Q6DD88 541 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 DIS3L2Q8IYB7 885 aaKnown RBP14.42□□□□□ -0.1
USP53-209ENST00000514665 TPCN1Q9ULQ1 816 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 MAPK8IP1Q9UQF2 711 aa14.42□□□□□ -0.1
USP53-209ENST00000514665 ZNF569Q5MCW4 686 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 LLPHQ9BRT6 129 aaKnown RBP14.41□□□□□ -0.1
USP53-209ENST00000514665 KCNH3Q9ULD8 1083 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 MTMR6Q9Y217 621 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 ELP1O95163 1332 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 NEURL1BA8MQ27 555 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 GNAT2P19087 354 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 CCT6AP40227 531 aaKnown RBP14.41□□□□□ -0.1
USP53-209ENST00000514665 ZAP70P43403 619 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 TNIP1Q15025 636 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 GSTTP1A0A1W2PQM5 241 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 TAF5LO75529 589 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 KRT2P35908 639 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 BEND3Q5T5X7 828 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 DNAJC10Q8IXB1 793 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 IQUBQ8NA54 791 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 CTNNBL1Q8WYA6 563 aaPredicted RBP14.41□□□□□ -0.1
USP53-209ENST00000514665 CCDC94Q9BW85 323 aaPredicted RBP14.41□□□□□ -0.1
USP53-209ENST00000514665 PBRM1Q86U86 1689 aa14.41□□□□□ -0.1
USP53-209ENST00000514665 ZNF202O95125 648 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 ADCK5Q3MIX3 580 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 NAA15Q9BXJ9 866 aaKnown RBP14.4□□□□□ -0.1
USP53-209ENST00000514665 GOLGA6L7A0A1B0GV03 622 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 RHOXF2BP0C7M4 288 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 CALML3P27482 149 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 CAPZA3Q96KX2 299 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 RHOXF2Q9BQY4 288 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 CTAGE9A4FU28 777 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 POLR2DO15514 142 aaKnown RBP14.4□□□□□ -0.1
USP53-209ENST00000514665 HLA-DOAP06340 250 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 ATP5JP18859 108 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 UBXN1Q04323 297 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 RNF187Q5TA31 235 aaPredicted RBP14.4□□□□□ -0.1
USP53-209ENST00000514665 MAATS1Q7Z4T9 603 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 TTC6Q86TZ1 520 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 FEZ1Q99689 392 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 BAG1Q99933 345 aaPredicted RBP14.4□□□□□ -0.1
USP53-209ENST00000514665 CEP170Q5SW79 1584 aa14.4□□□□□ -0.1
USP53-209ENST00000514665 V9GY48 417 aaPredicted RBP14.39□□□□□ -0.11
USP53-209ENST00000514665 KIF24Q5T7B8 1368 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 PLA2R1Q13018 1463 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 hCG_1642624A0A1W2PR95 340 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 TNNI2P48788 182 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 FANCCQ00597 558 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 CCDC42Q96M95 316 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 IBTKQ9P2D0 1353 aaPredicted RBP14.39□□□□□ -0.11
USP53-209ENST00000514665 SH3TC1Q8TE82 1336 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 E7EWF7 191 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 PROSER3Q2NL68 480 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 RILPL1Q5EBL4 403 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 SYCP3Q8IZU3 236 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 EHBP1Q8NDI1 1231 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 GTF3C6Q969F1 213 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 SRRTQ9BXP5 876 aaKnown RBP14.39□□□□□ -0.11
USP53-209ENST00000514665 SAMM50Q9Y512 469 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.39□□□□□ -0.11
USP53-209ENST00000514665 KRT40Q6A162 431 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 WWC2Q6AWC2 1192 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 VPS16Q9H269 839 aa14.39□□□□□ -0.11
USP53-209ENST00000514665 PCDH11XQ9BZA7 1347 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 PCDH11YQ9BZA8 1340 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 NR1I2O75469 434 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 LRMPQ12912 555 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 DTHD1Q6ZMT9 781 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 GOLGA1Q92805 767 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 USP28Q96RU2 1077 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 KDM5AP29375 1690 aaKnown RBP14.38□□□□□ -0.11
USP53-209ENST00000514665 CALM1P0DP23 149 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 CALM2P0DP24 149 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 CALM3P0DP25 149 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 KIF5AQ12840 1032 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 AEBP2Q6ZN18 517 aaPredicted RBP14.38□□□□□ -0.11
USP53-209ENST00000514665 STAMQ92783 540 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 ZNF622Q969S3 477 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP53-209ENST00000514665 TMEM87BQ96K49 555 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 LUC7L2Q9Y383 392 aaKnown RBP14.38□□□□□ -0.11
USP53-209ENST00000514665 CETN2P41208 172 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 GSTO1P78417 241 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 BTG4Q9NY30 223 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 KCNJ14Q9UNX9 436 aa14.38□□□□□ -0.11
USP53-209ENST00000514665 RTL9Q8NET4 1388 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 EVCP57679 992 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 CETN1Q12798 172 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 PPP1R9BQ96SB3 815 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 ARHGEF10O15013 1369 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 TBCAO75347 108 aaKnown RBP14.37□□□□□ -0.11
USP53-209ENST00000514665 ZSWIM6Q9HCJ5 1215 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 NFE2L3Q9Y4A8 694 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 CTDSPL2Q05D32 466 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 SF3B2Q13435 895 aaKnown RBP14.37□□□□□ -0.11
USP53-209ENST00000514665 TPTE2Q6XPS3 522 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.37□□□□□ -0.11
USP53-209ENST00000514665 PAF1Q8N7H5 531 aa14.37□□□□□ -0.11
USP53-209ENST00000514665 MYRIPQ8NFW9 859 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms