RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 GIGYF2Q6Y7W6 1299 aaKnown RBP12.76□□□□□ -0.37
TCOF1-211ENST00000513346 TTC6Q86TZ1 520 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 BANK1Q8NDB2 785 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 TM6SF1Q9BZW5 370 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 GUCA1BQ9UMX6 200 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 SBNO1A3KN83 1393 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 LDHCP07864 332 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 KRT83P78385 493 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 FAM98CQ17RN3 349 aaKnown RBP12.76□□□□□ -0.37
TCOF1-211ENST00000513346 CCDC178Q5BJE1 867 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 BRAPQ7Z569 592 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 NAPGQ99747 312 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-211ENST00000513346 MORC2Q9Y6X9 1032 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-211ENST00000513346 PREX2Q70Z35 1606 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 PLEKHG3A1L390 1219 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 IFIT3O14879 490 aaKnown RBP12.76□□□□□ -0.37
TCOF1-211ENST00000513346 CNGA4Q8IV77 575 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 SEC63Q9UGP8 760 aaKnown RBP12.76□□□□□ -0.37
TCOF1-211ENST00000513346 NEFHP12036 1026 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 RSRC1Q96IZ7 334 aaKnown RBP12.75□□□□□ -0.37
TCOF1-211ENST00000513346 DCAF5Q96JK2 942 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 SCLT1Q96NL6 688 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 SLC12A7Q9Y666 1083 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 GOLGA6CA6NDK9 693 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 NR1I2O75469 434 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 GOLGA6DP0CG33 693 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 ACTN2P35609 894 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 BAG6P46379 1132 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 MCMDC2Q4G0Z9 681 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 GOLGA6AQ9NYA3 693 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 EFCAB6Q5THR3 1501 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 METAP2P50579 478 aaKnown RBP eCLIP12.75□□□□□ -0.373e-8■■□□□ 13.7
TCOF1-211ENST00000513346 CAPZA3Q96KX2 299 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 ALG1Q9BT22 464 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 ARAP3Q8WWN8 1544 aa12.75□□□□□ -0.37
TCOF1-211ENST00000513346 RNMTO43148 476 aaKnown RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 TACC1O75410 805 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 MTIF2P46199 727 aaKnown RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 NLRP12P59046 1061 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 NAA25Q14CX7 972 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 SEPT7Q16181 437 aaKnown RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 NCOA7Q8NI08 942 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 SETDB2Q96T68 719 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 STK32BQ9NY57 414 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 HECW2Q9P2P5 1572 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 ST5P78524 1137 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 TDRD12Q587J7 1177 aaKnown RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 ZNF772Q68DY9 489 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 DHX32Q7L7V1 743 aaKnown RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 TTF2Q9UNY4 1162 aaKnown RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 RIMBP3CA6NJZ7 1639 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 RIMBP3BA6NNM3 1639 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 RIMBP3Q9UFD9 1639 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 DTNBO60941 627 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 UQCRFS1P1P0C7P4 283 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 ARHGAP25P42331 645 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 IRX5P78411 483 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 WWC2Q6AWC2 1192 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 RAB11FIP4Q86YS3 637 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 ZNF622Q969S3 477 aaKnown RBP eCLIP12.74□□□□□ -0.371e-6■■□□□ 12.3
TCOF1-211ENST00000513346 PYM1Q9BRP8 204 aaKnown RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 LLPHQ9BRT6 129 aaKnown RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 GCOM1H8Y6P7 765 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-211ENST00000513346 AKR1B10O60218 316 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 MYZAPP0CAP1 466 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 CLCN6P51797 869 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 NLRP3Q96P20 1036 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 LGR6Q9HBX8 967 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 JRKLQ9Y4A0 524 aa12.74□□□□□ -0.37
TCOF1-211ENST00000513346 SLC27A2O14975 620 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 TRIM21P19474 475 aaKnown RBP12.73□□□□□ -0.37
TCOF1-211ENST00000513346 VAV2P52735 878 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 APOBRQ0VD83 1088 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 EXOC4Q96A65 974 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 PRDM4Q9UKN5 801 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 PCDH11XQ9BZA7 1347 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 PCDH11YQ9BZA8 1340 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 HAND2P61296 217 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 ANKRD18AQ8IVF6 992 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 RABGGTAQ92696 567 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 TFCP2L1Q9NZI6 479 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 NIP7Q9Y221 180 aaKnown RBP eCLIP12.73□□□□□ -0.37
TCOF1-211ENST00000513346 FGFR1OPO95684 399 aaKnown RBP12.73□□□□□ -0.37
TCOF1-211ENST00000513346 BAG3O95817 575 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 KIF5AQ12840 1032 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 CCDC96Q2M329 555 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 SLFNL1Q499Z3 407 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 PNMA6AP0CW24 399 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-211ENST00000513346 SARNPP82979 210 aaKnown RBP12.73□□□□□ -0.37
TCOF1-211ENST00000513346 ME3Q16798 604 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 CFAP58Q5T655 872 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 RRAGBQ5VZM2 374 aa12.73□□□□□ -0.37
TCOF1-211ENST00000513346 KDM5AP29375 1690 aaKnown RBP12.72□□□□□ -0.37
TCOF1-211ENST00000513346 AFMP43652 599 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 MICU3Q86XE3 530 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 TMEM87AQ8NBN3 555 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 PPP1R13BQ96KQ4 1090 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 TRPC5Q9UL62 973 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-211ENST00000513346 RTCBQ9Y3I0 505 aaKnown RBP12.72□□□□□ -0.37
TCOF1-211ENST00000513346 GOPCQ9HD26 462 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms