RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 PCDH1Q08174 1060 aa12.92□□□□□ -0.34
USP53-206ENST00000510737 LIN7BQ9HAP6 207 aa12.92□□□□□ -0.34
USP53-206ENST00000510737 CYP4F12Q9HCS2 524 aa12.92□□□□□ -0.34
USP53-206ENST00000510737 USTQ9Y2C2 406 aa12.92□□□□□ -0.34
USP53-206ENST00000510737 GRIK1P39086 918 aa12.91□□□□□ -0.34
USP53-206ENST00000510737 KRTAP19-1Q8IUB9 90 aa12.91□□□□□ -0.34
USP53-206ENST00000510737 RXRBP28702 533 aa12.9□□□□□ -0.34
USP53-206ENST00000510737 FBXL6Q8N531 539 aa12.9□□□□□ -0.34
USP53-206ENST00000510737 FBLIM1Q8WUP2 373 aa12.9□□□□□ -0.34
USP53-206ENST00000510737 CLEC4MQ9H2X3 399 aaPredicted RBP12.9□□□□□ -0.34
USP53-206ENST00000510737 MYO15BQ96JP2 1530 aa12.89□□□□□ -0.35
USP53-206ENST00000510737 ECEL1O95672 775 aa12.89□□□□□ -0.35
USP53-206ENST00000510737 ORC1Q13415 861 aa12.89□□□□□ -0.35
USP53-206ENST00000510737 C14orf37Q86TY3 774 aa12.89□□□□□ -0.35
USP53-206ENST00000510737 SOX4Q06945 474 aaPredicted RBP12.88□□□□□ -0.35
USP53-206ENST00000510737 TRIM56Q9BRZ2 755 aaKnown RBP12.88□□□□□ -0.35
USP53-206ENST00000510737 BRPF3Q9ULD4 1205 aa12.88□□□□□ -0.35
USP53-206ENST00000510737 CUX2O14529 1486 aa12.88□□□□□ -0.35
USP53-206ENST00000510737 IGHA2P01877 340 aa12.87□□□□□ -0.35
USP53-206ENST00000510737 MAOBP27338 520 aa12.87□□□□□ -0.35
USP53-206ENST00000510737 ADMP35318 185 aa12.87□□□□□ -0.35
USP53-206ENST00000510737 GLYCTKQ8IVS8 523 aa12.87□□□□□ -0.35
USP53-206ENST00000510737 PIM2Q9P1W9 311 aa12.87□□□□□ -0.35
USP53-206ENST00000510737 FAM95CA0A1B0GW59 222 aa12.86□□□□□ -0.35
USP53-206ENST00000510737 LCE3BQ5TA77 95 aa12.86□□□□□ -0.35
USP53-206ENST00000510737 KIAA0319Q5VV43 1072 aa12.86□□□□□ -0.35
USP53-206ENST00000510737 FAM129BQ96TA1 746 aa12.86□□□□□ -0.35
USP53-206ENST00000510737 ADH5P11766 374 aa12.85□□□□□ -0.35
USP53-206ENST00000510737 NFKBIBQ15653 356 aa12.85□□□□□ -0.35
USP53-206ENST00000510737 IRAK1P51617 712 aa12.84□□□□□ -0.35
USP53-206ENST00000510737 USP11P51784 963 aa12.84□□□□□ -0.35
USP53-206ENST00000510737 EZH1Q92800 747 aaPredicted RBP12.84□□□□□ -0.35
USP53-206ENST00000510737 NPHS2Q9NP85 383 aa12.84□□□□□ -0.35
USP53-206ENST00000510737 ACTL7BQ9Y614 415 aa12.84□□□□□ -0.35
USP53-206ENST00000510737 MSMPQ1L6U9 139 aa12.83□□□□□ -0.36
USP53-206ENST00000510737 GATA6Q92908 595 aa12.83□□□□□ -0.36
USP53-206ENST00000510737 ZNF576Q9H609 170 aa12.83□□□□□ -0.36
USP53-206ENST00000510737 B3GALT4O96024 378 aa12.82□□□□□ -0.36
USP53-206ENST00000510737 TAL1P17542 331 aaPredicted RBP12.82□□□□□ -0.36
USP53-206ENST00000510737 POU4F3Q15319 338 aa12.82□□□□□ -0.36
USP53-206ENST00000510737 TXNDC2Q86VQ3 553 aa12.82□□□□□ -0.36
USP53-206ENST00000510737 ATG3Q9NT62 314 aa12.82□□□□□ -0.36
USP53-206ENST00000510737 PRKAG2Q9UGJ0 569 aa12.82□□□□□ -0.36
USP53-206ENST00000510737 GPR182O15218 404 aa12.81□□□□□ -0.36
USP53-206ENST00000510737 WNT11O96014 354 aa12.81□□□□□ -0.36
USP53-206ENST00000510737 ITPKAP23677 461 aa12.81□□□□□ -0.36
USP53-206ENST00000510737 PAOXQ6QHF9 649 aa12.81□□□□□ -0.36
USP53-206ENST00000510737 NFXL1Q6ZNB6 911 aa12.81□□□□□ -0.36
USP53-206ENST00000510737 LEMD3Q9Y2U8 911 aa12.81□□□□□ -0.36
USP53-206ENST00000510737 FOSL1P15407 271 aa12.8□□□□□ -0.36
USP53-206ENST00000510737 B4GALNT3Q6L9W6 998 aa12.8□□□□□ -0.36
USP53-206ENST00000510737 OSBPL1AQ9BXW6 950 aa12.8□□□□□ -0.36
USP53-206ENST00000510737 EHD4Q9H223 541 aa12.8□□□□□ -0.36
USP53-206ENST00000510737 NDUFB5O43674 189 aa12.79□□□□□ -0.36
USP53-206ENST00000510737 CPNE3O75131 537 aaKnown RBP12.79□□□□□ -0.36
USP53-206ENST00000510737 CYP11A1P05108 521 aa12.79□□□□□ -0.36
USP53-206ENST00000510737 ABCB6Q9NP58 842 aa12.79□□□□□ -0.36
USP53-206ENST00000510737 FAM105AQ9NUU6 356 aa12.79□□□□□ -0.36
USP53-206ENST00000510737 FAM170BA6NMN3 283 aa12.78□□□□□ -0.36
USP53-206ENST00000510737 AKAP4Q5JQC9 854 aa12.78□□□□□ -0.36
USP53-206ENST00000510737 ZAR1Q86SH2 424 aa12.78□□□□□ -0.36
USP53-206ENST00000510737 NFICP08651 508 aa12.77□□□□□ -0.37
USP53-206ENST00000510737 TBC1D32Q96NH3 1257 aa12.77□□□□□ -0.37
USP53-206ENST00000510737 SEMA6CQ9H3T2 930 aa12.77□□□□□ -0.37
USP53-206ENST00000510737 ADGRE2Q9UHX3 823 aa12.77□□□□□ -0.37
USP53-206ENST00000510737 RAB6AP20340 208 aa12.76□□□□□ -0.37
USP53-206ENST00000510737 CCDC74AQ96AQ1 378 aa12.76□□□□□ -0.37
USP53-206ENST00000510737 NIF3L1Q9GZT8 377 aa12.76□□□□□ -0.37
USP53-206ENST00000510737 EIF1AYO14602 144 aaKnown RBP12.75□□□□□ -0.37
USP53-206ENST00000510737 PDE3BQ13370 1112 aa12.75□□□□□ -0.37
USP53-206ENST00000510737 DYMQ7RTS9 669 aa12.75□□□□□ -0.37
USP53-206ENST00000510737 RETREG2Q8NC44 543 aa12.75□□□□□ -0.37
USP53-206ENST00000510737 GLIS3Q8NEA6 775 aa12.75□□□□□ -0.37
USP53-206ENST00000510737 FMNL2Q96PY5 1086 aa12.75□□□□□ -0.37
USP53-206ENST00000510737 GSX1Q9H4S2 264 aaPredicted RBP12.75□□□□□ -0.37
USP53-206ENST00000510737 ACSS3Q9H6R3 686 aa12.75□□□□□ -0.37
USP53-206ENST00000510737 DYNC1LI2O43237 492 aaPredicted RBP12.74□□□□□ -0.37
USP53-206ENST00000510737 EIF4EBP3O60516 100 aaPredicted RBP12.74□□□□□ -0.37
USP53-206ENST00000510737 NEFLP07196 543 aa12.74□□□□□ -0.37
USP53-206ENST00000510737 FAAP100Q0VG06 881 aa12.74□□□□□ -0.37
USP53-206ENST00000510737 ABI1Q8IZP0 508 aa12.74□□□□□ -0.37
USP53-206ENST00000510737 GIMAP7Q8NHV1 300 aa12.74□□□□□ -0.37
USP53-206ENST00000510737 GOLGA2P5Q9HBQ8 144 aa12.74□□□□□ -0.37
USP53-206ENST00000510737 CCDC39Q9UFE4 941 aa12.74□□□□□ -0.37
USP53-206ENST00000510737 CPSF6Q16630 551 aaKnown RBP eCLIP12.73□□□□□ -0.37
USP53-206ENST00000510737 PRPF40BQ6NWY9 871 aaKnown RBP12.73□□□□□ -0.37
USP53-206ENST00000510737 SEZ6L2Q6UXD5 910 aa12.73□□□□□ -0.37
USP53-206ENST00000510737 CITED4Q96RK1 184 aa12.73□□□□□ -0.37
USP53-206ENST00000510737 ARID3AQ99856 593 aa12.73□□□□□ -0.37
USP53-206ENST00000510737 CORO1BQ9BR76 489 aa12.73□□□□□ -0.37
USP53-206ENST00000510737 WDR18Q9BV38 432 aa12.73□□□□□ -0.37
USP53-206ENST00000510737 PAX4O43316 350 aa12.72□□□□□ -0.37
USP53-206ENST00000510737 AOC2O75106 756 aa12.72□□□□□ -0.37
USP53-206ENST00000510737 WDR89Q96FK6 387 aaPredicted RBP12.72□□□□□ -0.37
USP53-206ENST00000510737 PPP1R9AQ9ULJ8 1098 aa12.72□□□□□ -0.37
USP53-206ENST00000510737 AP4E1Q9UPM8 1137 aa12.72□□□□□ -0.37
USP53-206ENST00000510737 PRNPP04156 253 aa12.71□□□□□ -0.37
USP53-206ENST00000510737 PTPN12Q05209 780 aaKnown RBP12.71□□□□□ -0.37
USP53-206ENST00000510737 EPS8L3Q8TE67 593 aaKnown RBP12.71□□□□□ -0.37
USP53-206ENST00000510737 METTL22Q9BUU2 404 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms