RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 CDK11AQ9UQ88 783 aaPredicted RBP6.06□□□□□ -1.44
USP53-204ENST00000507906 SIN3BO75182 1162 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 B3GALT4O96024 378 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 RPS26P62854 115 aaKnown RBP6.05□□□□□ -1.44
USP53-204ENST00000507906 PCDH1Q08174 1060 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 TRIM42Q8IWZ5 723 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 HNRNPLLQ8WVV9 542 aaKnown RBP6.05□□□□□ -1.44
USP53-204ENST00000507906 NKD1Q969G9 470 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 ANAPC16Q96DE5 110 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 LACRTQ9GZZ8 138 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 ADAM19Q9H013 955 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 CLEC4MQ9H2X3 399 aaPredicted RBP6.05□□□□□ -1.44
USP53-204ENST00000507906 ZFYVE1Q9HBF4 777 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 SLC6A14Q9UN76 642 aa6.05□□□□□ -1.44
USP53-204ENST00000507906 FAM221BA6H8Z2 402 aa6.04□□□□□ -1.44
USP53-204ENST00000507906 GHRHP01286 108 aa6.04□□□□□ -1.44
USP53-204ENST00000507906 SELPP16109 830 aa6.04□□□□□ -1.44
USP53-204ENST00000507906 CDK8P49336 464 aa6.04□□□□□ -1.44
USP53-204ENST00000507906 SOGA3Q5TF21 947 aa6.04□□□□□ -1.44
USP53-204ENST00000507906 GAL3ST3Q96A11 431 aa6.04□□□□□ -1.44
USP53-204ENST00000507906 LPIN3Q9BQK8 851 aa6.04□□□□□ -1.44
USP53-204ENST00000507906 SMG9Q9H0W8 520 aaKnown RBP6.04□□□□□ -1.44
USP53-204ENST00000507906 K7ELQ4 463 aaPredicted RBP6.03□□□□□ -1.44
USP53-204ENST00000507906 SMAD7O15105 426 aaKnown RBP6.03□□□□□ -1.44
USP53-204ENST00000507906 CILPO75339 1184 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 ESRRAP11474 423 aaPredicted RBP6.03□□□□□ -1.44
USP53-204ENST00000507906 BMP4P12644 408 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 EPHA1P21709 976 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 NME2P22392 152 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 CLCQ05315 142 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 TCEAL1Q15170 157 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 RNFT1Q5M7Z0 435 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 SDE2Q6IQ49 451 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.03□□□□□ -1.44
USP53-204ENST00000507906 PDZD3Q86UT5 571 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 FCHSD1Q86WN1 690 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 SULF2Q8IWU5 870 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 CKAP2LQ8IYA6 745 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 CELF2-AS1Q8N7Q2 184 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 GATAD2BQ8WXI9 593 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 TNFRSF25Q93038 417 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 COL25A1Q9BXS0 654 aaPredicted RBP6.03□□□□□ -1.44
USP53-204ENST00000507906 LRRC3Q9BY71 257 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 BRMS1Q9HCU9 246 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 PHF24Q9UPV7 400 aa6.03□□□□□ -1.44
USP53-204ENST00000507906 MRPL42Q9Y6G3 142 aaKnown RBP6.03□□□□□ -1.44
USP53-204ENST00000507906 SOX1O00570 391 aaPredicted RBP6.02□□□□□ -1.45
USP53-204ENST00000507906 SMNDC1O75940 238 aaKnown RBP eCLIP6.02□□□□□ -1.45
USP53-204ENST00000507906 HSP90B1P14625 803 aaKnown RBP6.02□□□□□ -1.45
USP53-204ENST00000507906 ARNTP27540 789 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 ADH7P40394 386 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 ZNF252P-AS1Q0IIN9 211 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 NEUROD1Q13562 356 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 RAB33AQ14088 237 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 EGFLAMQ63HQ2 1017 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 SV2AQ7L0J3 742 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 MICAL1Q8TDZ2 1067 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 NANOS1Q8WY41 292 aaKnown RBP6.02□□□□□ -1.45
USP53-204ENST00000507906 TRERF1Q96PN7 1200 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 SRRTQ9BXP5 876 aaKnown RBP6.02□□□□□ -1.45
USP53-204ENST00000507906 KANSL2Q9H9L4 492 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 PRKAG3Q9UGI9 489 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 TMA7Q9Y2S6 64 aaKnown RBP6.02□□□□□ -1.45
USP53-204ENST00000507906 POLR3KQ9Y2Y1 108 aaPredicted RBP6.02□□□□□ -1.45
USP53-204ENST00000507906 STARD13Q9Y3M8 1113 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 SBNO2Q9Y2G9 1366 aa6.02□□□□□ -1.45
USP53-204ENST00000507906 ADARB2-AS1A8MUL3 147 aa6.01□□□□□ -1.45
USP53-204ENST00000507906 ECEL1O95672 775 aa6.01□□□□□ -1.45
USP53-204ENST00000507906 CDC25BP30305 580 aa6.01□□□□□ -1.45
USP53-204ENST00000507906 BAG6P46379 1132 aa6.01□□□□□ -1.45
USP53-204ENST00000507906 COL9A2Q14055 689 aaPredicted RBP6.01□□□□□ -1.45
USP53-204ENST00000507906 GRIK5Q16478 980 aa6.01□□□□□ -1.45
USP53-204ENST00000507906 CCDC84Q86UT8 332 aaPredicted RBP6.01□□□□□ -1.45
USP53-204ENST00000507906 CPLX3Q8WVH0 158 aa6.01□□□□□ -1.45
USP53-204ENST00000507906 MIR1-1HGQ9H1L0 117 aa6.01□□□□□ -1.45
USP53-204ENST00000507906 TNKS2Q9H2K2 1166 aa6.01□□□□□ -1.45
USP53-204ENST00000507906 NEURL1BA8MQ27 555 aa6□□□□□ -1.45
USP53-204ENST00000507906 PTPRAP18433 802 aa6□□□□□ -1.45
USP53-204ENST00000507906 CANXP27824 592 aaKnown RBP6□□□□□ -1.45
USP53-204ENST00000507906 MCM4P33991 863 aa6□□□□□ -1.45
USP53-204ENST00000507906 GIPRP48546 466 aa6□□□□□ -1.45
USP53-204ENST00000507906 PPP2R3AQ06190 1150 aa6□□□□□ -1.45
USP53-204ENST00000507906 NBPF6Q5VWK0 638 aa6□□□□□ -1.45
USP53-204ENST00000507906 GDF6Q6KF10 455 aaPredicted RBP6□□□□□ -1.45
USP53-204ENST00000507906 FOXR1Q6PIV2 292 aa6□□□□□ -1.45
USP53-204ENST00000507906 ELMSAN1Q6PJG2 1045 aa6□□□□□ -1.45
USP53-204ENST00000507906 WHAMMQ8TF30 809 aa6□□□□□ -1.45
USP53-204ENST00000507906 RNPC3Q96LT9 517 aaKnown RBP6□□□□□ -1.45
USP53-204ENST00000507906 NBPF4Q96M43 638 aa6□□□□□ -1.45
USP53-204ENST00000507906 ANTXR1Q9H6X2 564 aa6□□□□□ -1.45
USP53-204ENST00000507906 CACNA2D2Q9NY47 1150 aa6□□□□□ -1.45
USP53-204ENST00000507906 STRIP2Q9ULQ0 834 aa6□□□□□ -1.45
USP53-204ENST00000507906 CYP8B1Q9UNU6 501 aa6□□□□□ -1.45
USP53-204ENST00000507906 ROBO2Q9HCK4 1378 aa6□□□□□ -1.45
USP53-204ENST00000507906 ANKRD62A6NC57 917 aa5.99□□□□□ -1.45
USP53-204ENST00000507906 TM4SF5O14894 197 aa5.99□□□□□ -1.45
USP53-204ENST00000507906 CTSBP07858 339 aa5.99□□□□□ -1.45
USP53-204ENST00000507906 MX2P20592 715 aa5.99□□□□□ -1.45
USP53-204ENST00000507906 MPP2Q14168 576 aa5.99□□□□□ -1.45
USP53-204ENST00000507906 RASA3Q14644 834 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms