RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 IQSEC3Q9UPP2 1182 aaPredicted RBP27.75■■■□□ 2.03
HDDC3-203ENST00000494993 PDE8BO95263 885 aa27.74■■■□□ 2.03
HDDC3-203ENST00000494993 SLFN5Q08AF3 891 aa27.74■■■□□ 2.03
HDDC3-203ENST00000494993 CAVIN4Q5BKX8 364 aa27.74■■■□□ 2.03
HDDC3-203ENST00000494993 ANKRD13AQ8IZ07 590 aa27.74■■■□□ 2.03
HDDC3-203ENST00000494993 KLHDC4Q8TBB5 520 aa27.74■■■□□ 2.03
HDDC3-203ENST00000494993 USP44Q9H0E7 712 aa27.74■■■□□ 2.03
HDDC3-203ENST00000494993 IGF2BP3O00425 579 aaKnown RBP eCLIP27.73■■■□□ 2.03
HDDC3-203ENST00000494993 CHAF1AQ13111 956 aaPredicted RBP27.73■■■□□ 2.03
HDDC3-203ENST00000494993 GRIK5Q16478 980 aa27.73■■■□□ 2.03
HDDC3-203ENST00000494993 FBXO46Q6PJ61 603 aaPredicted RBP27.73■■■□□ 2.03
HDDC3-203ENST00000494993 TBC1D22AQ8WUA7 517 aa27.73■■■□□ 2.03
HDDC3-203ENST00000494993 FRAT2O75474 233 aaPredicted RBP27.72■■■□□ 2.03
HDDC3-203ENST00000494993 GJA5P36382 358 aa27.72■■■□□ 2.03
HDDC3-203ENST00000494993 TEPSINQ96N21 525 aa27.72■■■□□ 2.03
HDDC3-203ENST00000494993 TCP10L2B9ZVM9 353 aa27.7■■■□□ 2.02
HDDC3-203ENST00000494993 TNNI2P48788 182 aa27.7■■■□□ 2.02
HDDC3-203ENST00000494993 HDLBPQ00341 1268 aaKnown RBP27.7■■■□□ 2.02
HDDC3-203ENST00000494993 ALDH1L2Q3SY69 923 aa27.7■■■□□ 2.02
HDDC3-203ENST00000494993 CDAN1Q8IWY9 1227 aa27.7■■■□□ 2.02
HDDC3-203ENST00000494993 KIF16BQ96L93 1317 aa27.69■■■□□ 2.02
HDDC3-203ENST00000494993 BCAMP50895 628 aa27.69■■■□□ 2.02
HDDC3-203ENST00000494993 TMEM39BQ9GZU3 492 aa27.69■■■□□ 2.02
HDDC3-203ENST00000494993 FGFR2P21802 821 aa27.68■■■□□ 2.02
HDDC3-203ENST00000494993 PUM3Q15397 648 aaKnown RBP27.68■■■□□ 2.02
HDDC3-203ENST00000494993 TEKT1Q969V4 418 aa27.68■■■□□ 2.02
HDDC3-203ENST00000494993 ELP3Q9H9T3 547 aa27.68■■■□□ 2.02
HDDC3-203ENST00000494993 IFIT1P09914 478 aaKnown RBP27.67■■■□□ 2.02
HDDC3-203ENST00000494993 RFX5P48382 616 aaPredicted RBP27.67■■■□□ 2.02
HDDC3-203ENST00000494993 OTUD7BQ6GQQ9 843 aa27.67■■■□□ 2.02
HDDC3-203ENST00000494993 OPTNQ96CV9 577 aa27.67■■■□□ 2.02
HDDC3-203ENST00000494993 CDCA7LQ96GN5 454 aa27.67■■■□□ 2.02
HDDC3-203ENST00000494993 SMC4Q9NTJ3 1288 aa27.67■■■□□ 2.02
HDDC3-203ENST00000494993 TESPA1A2RU30 521 aaPredicted RBP27.65■■■□□ 2.02
HDDC3-203ENST00000494993 EYA2O00167 538 aa27.65■■■□□ 2.02
HDDC3-203ENST00000494993 PPP1R3FQ6ZSY5 799 aaPredicted RBP27.65■■■□□ 2.02
HDDC3-203ENST00000494993 MRIQ9BWK5 157 aa27.65■■■□□ 2.02
HDDC3-203ENST00000494993 MAST3O60307 1309 aa27.65■■■□□ 2.02
HDDC3-203ENST00000494993 ZDHHC15Q96MV8 337 aa27.64■■■□□ 2.02
HDDC3-203ENST00000494993 PTPN18Q99952 460 aa27.64■■■□□ 2.02
HDDC3-203ENST00000494993 SUGT1Q9Y2Z0 365 aa27.64■■■□□ 2.02
HDDC3-203ENST00000494993 AK9Q5TCS8 1911 aa27.63■■■□□ 2.01
HDDC3-203ENST00000494993 SLC34A2O95436 690 aa27.63■■■□□ 2.01
HDDC3-203ENST00000494993 CACNB3P54284 484 aa27.63■■■□□ 2.01
HDDC3-203ENST00000494993 CRHR2Q13324 411 aa27.63■■■□□ 2.01
HDDC3-203ENST00000494993 DDX55Q8NHQ9 600 aaKnown RBP eCLIP27.63■■■□□ 2.01
HDDC3-203ENST00000494993 TRIM17Q9Y577 477 aa27.63■■■□□ 2.01
HDDC3-203ENST00000494993 SLC5A1P13866 664 aa27.62■■■□□ 2.01
HDDC3-203ENST00000494993 MAP3K9P80192 1104 aa27.62■■■□□ 2.01
HDDC3-203ENST00000494993 VGLL4Q14135 290 aa27.62■■■□□ 2.01
HDDC3-203ENST00000494993 OTOP1Q7RTM1 612 aa27.62■■■□□ 2.01
HDDC3-203ENST00000494993 TRMT2AQ8IZ69 625 aaKnown RBP27.62■■■□□ 2.01
HDDC3-203ENST00000494993 TMOD2Q9NZR1 351 aa27.62■■■□□ 2.01
HDDC3-203ENST00000494993 CNKSR2Q8WXI2 1034 aa27.61■■■□□ 2.01
HDDC3-203ENST00000494993 LPIN2Q92539 896 aa27.61■■■□□ 2.01
HDDC3-203ENST00000494993 ERO1AQ96HE7 468 aa27.61■■■□□ 2.01
HDDC3-203ENST00000494993 MS4A4AQ96JQ5 239 aa27.61■■■□□ 2.01
HDDC3-203ENST00000494993 CSADQ9Y600 493 aa27.61■■■□□ 2.01
HDDC3-203ENST00000494993 HTTP42858 3142 aa27.61■■■□□ 2.01
HDDC3-203ENST00000494993 APOBEC3HQ6NTF7 200 aaKnown RBP27.6■■■□□ 2.01
HDDC3-203ENST00000494993 ATG9AQ7Z3C6 839 aa27.6■■■□□ 2.01
HDDC3-203ENST00000494993 FAM83AQ86UY5 434 aa27.6■■■□□ 2.01
HDDC3-203ENST00000494993 RBBP6Q7Z6E9 1792 aaKnown RBP27.59■■■□□ 2.01
HDDC3-203ENST00000494993 UBTFL1P0CB47 393 aaPredicted RBP27.59■■■□□ 2.01
HDDC3-203ENST00000494993 FKBP1CQ5VVH2 108 aa27.59■■■□□ 2.01
HDDC3-203ENST00000494993 HHIPL2Q6UWX4 724 aa27.59■■■□□ 2.01
HDDC3-203ENST00000494993 CD99L2Q8TCZ2 262 aa27.59■■■□□ 2.01
HDDC3-203ENST00000494993 CT47B1P0C2W7 299 aaPredicted RBP27.58■■■□□ 2.01
HDDC3-203ENST00000494993 WDR66Q8TBY9 1149 aa27.58■■■□□ 2.01
HDDC3-203ENST00000494993 BRI3BPQ8WY22 251 aa27.58■■■□□ 2.01
HDDC3-203ENST00000494993 FBXO3Q9UK99 471 aa27.58■■■□□ 2.01
HDDC3-203ENST00000494993 RPAP1Q9BWH6 1393 aaPredicted RBP27.58■■■□□ 2.01
HDDC3-203ENST00000494993 GTF2A2P52657 109 aa27.57■■■□□ 2
HDDC3-203ENST00000494993 OTUD5Q96G74 571 aa27.57■■■□□ 2
HDDC3-203ENST00000494993 NOB1Q9ULX3 412 aaKnown RBP27.57■■■□□ 2
HDDC3-203ENST00000494993 CCL15-CCL14A0A0B4J2E2 113 aa27.56■■■□□ 2
HDDC3-203ENST00000494993 CIAO1O76071 339 aa27.56■■■□□ 2
HDDC3-203ENST00000494993 SP3Q02447 781 aa27.56■■■□□ 2
HDDC3-203ENST00000494993 CCL15Q16663 113 aa27.56■■■□□ 2
HDDC3-203ENST00000494993 HOOK2Q96ED9 719 aa27.56■■■□□ 2
HDDC3-203ENST00000494993 SIL1Q9H173 461 aa27.56■■■□□ 2
HDDC3-203ENST00000494993 MYH2Q9UKX2 1941 aa27.55■■■□□ 2
HDDC3-203ENST00000494993 SPDYE5A6NIY4 337 aa27.55■■■□□ 2
HDDC3-203ENST00000494993 ATP2B3Q16720 1220 aa27.55■■■□□ 2
HDDC3-203ENST00000494993 WRNIP1Q96S55 665 aa27.55■■■□□ 2
HDDC3-203ENST00000494993 PTPN22Q9Y2R2 807 aa27.55■■■□□ 2
HDDC3-203ENST00000494993 SNCAIPQ9Y6H5 919 aa27.55■■■□□ 2
HDDC3-203ENST00000494993 KIAA0100Q14667 2235 aaKnown RBP27.55■■■□□ 2
HDDC3-203ENST00000494993 TAF1CQ15572 869 aaPredicted RBP27.54■■■□□ 2
HDDC3-203ENST00000494993 API5Q9BZZ5 524 aaKnown RBP27.54■■■□□ 2
HDDC3-203ENST00000494993 EFCC1Q9HA90 598 aa27.54■■■□□ 2
HDDC3-203ENST00000494993 CEP126Q9P2H0 1117 aa27.54■■■□□ 2
HDDC3-203ENST00000494993 DCAF15Q66K64 600 aa27.53■■■□□ 2
HDDC3-203ENST00000494993 CENPFP49454 3210 aa27.53■■■□□ 2
HDDC3-203ENST00000494993 ERO1BQ86YB8 467 aa27.52■■■□□ 2
HDDC3-203ENST00000494993 ZKSCAN4Q969J2 545 aaPredicted RBP27.52■■■□□ 2
HDDC3-203ENST00000494993 ZFYVE28Q9HCC9 887 aa27.52■■■□□ 2
HDDC3-203ENST00000494993 HDAC5Q9UQL6 1122 aa27.52■■■□□ 2
HDDC3-203ENST00000494993 DAGLAQ9Y4D2 1042 aa27.52■■■□□ 2
HDDC3-203ENST00000494993 LRRFIP2Q9Y608 721 aaKnown RBP27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms