RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 USP28Q96RU2 1077 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 CDC5LQ99459 802 aaKnown RBP11.25□□□□□ -0.61
NPHP3-209ENST00000493732 KRT23Q9C075 422 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 NAT10Q9H0A0 1025 aaKnown RBP11.25□□□□□ -0.61
NPHP3-209ENST00000493732 CBX8Q9HC52 389 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 CICQ96RK0 1608 aaPredicted RBP11.25□□□□□ -0.61
NPHP3-209ENST00000493732 ARAP2Q8WZ64 1704 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 SPATA31A1Q5TZJ5 1347 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 UBN2Q6ZU65 1347 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 GOLGA6L19H0YKK7 550 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 FDPSP14324 419 aaKnown RBP11.25□□□□□ -0.61
NPHP3-209ENST00000493732 ATP6V1AP38606 617 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 STRBPQ96SI9 672 aaKnown RBP11.25□□□□□ -0.61
NPHP3-209ENST00000493732 PIH1D3Q9NQM4 214 aaKnown RBP11.25□□□□□ -0.61
NPHP3-209ENST00000493732 ANO10Q9NW15 660 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 HPS5Q9UPZ3 1129 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 COL16A1Q07092 1604 aaPredicted RBP11.25□□□□□ -0.61
NPHP3-209ENST00000493732 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.25□□□□□ -0.61
NPHP3-209ENST00000493732 NWD2Q9ULI1 1742 aa11.25□□□□□ -0.61
NPHP3-209ENST00000493732 ROBO1Q9Y6N7 1651 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 TCRBV5S4A2TA0A5A2 114 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 LIFRP42702 1097 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 PHKA1P46020 1223 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 METAP2P50579 478 aaKnown RBP eCLIP11.24□□□□□ -0.61
NPHP3-209ENST00000493732 ANTXR2P58335 489 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 STK38Q15208 465 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 ZRSR1Q15695 479 aaKnown RBP11.24□□□□□ -0.61
NPHP3-209ENST00000493732 INTS5Q6P9B9 1019 aaKnown RBP11.24□□□□□ -0.61
NPHP3-209ENST00000493732 CLEC4GQ6UXB4 293 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 PI16Q6UXB8 463 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 JMYQ8N9B5 988 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 WASF1Q92558 559 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 DOT1LQ8TEK3 1739 aa11.24□□□□□ -0.61
NPHP3-209ENST00000493732 LOC102724428A0A0B4J2F2 783 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 A0A0G2JLW4 131 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 SH2B2O14492 632 aaPredicted RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 CDC25BP30305 580 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 CRKLP46109 303 aaKnown RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 SIK1P57059 783 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 CEBPZQ03701 1054 aaKnown RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 NOLC1Q14978 699 aaKnown RBP eCLIP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 SART3Q15020 963 aaKnown RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 SUSD4Q5VX71 490 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 BARGINQ6ZT62 677 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 SGMS1Q86VZ5 419 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 TMTC2Q8N394 836 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 PRIMPOLQ96LW4 560 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 NAPBQ9H115 298 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 RNF41Q9H4P4 317 aaPredicted RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 SPTLC3Q9NUV7 552 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 GNL3LQ9NVN8 582 aaKnown RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 R3HCC1Q9Y3T6 440 aaKnown RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 PNPLA7Q6ZV29 1317 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 RREB1Q92766 1687 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 ZBTB43O43298 467 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 RRP9O43818 475 aaKnown RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 CAMTA2O94983 1202 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 RCAN1P53805 252 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 TRIM29Q14134 588 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 DNTTIP2Q5QJE6 756 aaKnown RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 SARM1Q6SZW1 724 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 FSIP1Q8NA03 581 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 LINC00301Q8NCQ3 95 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 ENGASEQ8NFI3 743 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 TRIM5Q9C035 493 aa11.23□□□□□ -0.61
NPHP3-209ENST00000493732 DDX60Q8IY21 1712 aaKnown RBP11.23□□□□□ -0.61
NPHP3-209ENST00000493732 SPTLC2O15270 562 aa11.22□□□□□ -0.61
NPHP3-209ENST00000493732 SNW1Q13573 536 aaKnown RBP11.22□□□□□ -0.61
NPHP3-209ENST00000493732 DHX8Q14562 1220 aaKnown RBP11.22□□□□□ -0.61
NPHP3-209ENST00000493732 PPP2R5BQ15173 497 aa11.22□□□□□ -0.61
NPHP3-209ENST00000493732 MYSM1Q5VVJ2 828 aa11.22□□□□□ -0.61
NPHP3-209ENST00000493732 LUZP1Q86V48 1076 aa11.22□□□□□ -0.61
NPHP3-209ENST00000493732 CEP57L1Q8IYX8 460 aa11.22□□□□□ -0.61
NPHP3-209ENST00000493732 IFNL3Q8IZI9 196 aa11.22□□□□□ -0.61
NPHP3-209ENST00000493732 STK36Q9NRP7 1315 aa11.22□□□□□ -0.61
NPHP3-209ENST00000493732 CCDC196A0A1B0GTZ2 297 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 BECN2A8MW95 431 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 NEMFO60524 1076 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 GUCY1B3Q02153 619 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 TMED8Q6PL24 325 aaPredicted RBP11.21□□□□□ -0.61
NPHP3-209ENST00000493732 APOA5Q6Q788 366 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 NFXL1Q6ZNB6 911 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 MFSD6Q6ZSS7 791 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 PLA2G4DQ86XP0 818 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 DRC7Q8IY82 874 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 SDF4Q9BRK5 362 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 PCDHA7Q9UN72 937 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 NIP7Q9Y221 180 aaKnown RBP eCLIP11.21□□□□□ -0.61
NPHP3-209ENST00000493732 KAT6BQ8WYB5 2073 aa11.21□□□□□ -0.61
NPHP3-209ENST00000493732 ERICH2A1L162 156 aa11.21□□□□□ -0.62
NPHP3-209ENST00000493732 CCDC69A6NI79 296 aa11.21□□□□□ -0.62
NPHP3-209ENST00000493732 DYNC1I1O14576 645 aa11.21□□□□□ -0.62
NPHP3-209ENST00000493732 NTSR2O95665 410 aa11.21□□□□□ -0.62
NPHP3-209ENST00000493732 IARSP41252 1262 aaKnown RBP11.21□□□□□ -0.62
NPHP3-209ENST00000493732 ZNF75DP51815 510 aa11.21□□□□□ -0.62
NPHP3-209ENST00000493732 FOSBP53539 338 aa11.21□□□□□ -0.62
NPHP3-209ENST00000493732 KIF23Q02241 960 aaPredicted RBP11.21□□□□□ -0.62
NPHP3-209ENST00000493732 GNL2Q13823 731 aaKnown RBP11.21□□□□□ -0.62
NPHP3-209ENST00000493732 RASGRF1Q13972 1273 aa11.21□□□□□ -0.62
NPHP3-209ENST00000493732 TMEM67Q5HYA8 995 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms