RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 GRIK5Q16478 980 aa21.89■■□□□ 1.09
COL9A1-210ENST00000493682 LRRC24Q50LG9 513 aa21.89■■□□□ 1.09
COL9A1-210ENST00000493682 CDAN1Q8IWY9 1227 aa21.89■■□□□ 1.09
COL9A1-210ENST00000493682 MRPL50Q8N5N7 158 aaKnown RBP21.89■■□□□ 1.09
COL9A1-210ENST00000493682 ANKRD44Q8N8A2 993 aa21.89■■□□□ 1.09
COL9A1-210ENST00000493682 IQSEC3Q9UPP2 1182 aaPredicted RBP21.89■■□□□ 1.09
COL9A1-210ENST00000493682 ARAP2Q8WZ64 1704 aa21.89■■□□□ 1.09
COL9A1-210ENST00000493682 METTL24Q5JXM2 366 aa21.88■■□□□ 1.09
COL9A1-210ENST00000493682 OTUD7BQ6GQQ9 843 aa21.88■■□□□ 1.09
COL9A1-210ENST00000493682 OTOP1Q7RTM1 612 aa21.88■■□□□ 1.09
COL9A1-210ENST00000493682 VPS37DQ86XT2 251 aa21.88■■□□□ 1.09
COL9A1-210ENST00000493682 PTPN18Q99952 460 aa21.88■■□□□ 1.09
COL9A1-210ENST00000493682 ELP3Q9H9T3 547 aa21.88■■□□□ 1.09
COL9A1-210ENST00000493682 TRIM17Q9Y577 477 aa21.88■■□□□ 1.09
COL9A1-210ENST00000493682 TESPA1A2RU30 521 aaPredicted RBP21.87■■□□□ 1.09
COL9A1-210ENST00000493682 TCP10L2B9ZVM9 353 aa21.87■■□□□ 1.09
COL9A1-210ENST00000493682 CHAF1AQ13111 956 aaPredicted RBP21.87■■□□□ 1.09
COL9A1-210ENST00000493682 CRHR2Q13324 411 aa21.87■■□□□ 1.09
COL9A1-210ENST00000493682 VGLL2Q8N8G2 317 aa21.87■■□□□ 1.09
COL9A1-210ENST00000493682 OPTNQ96CV9 577 aa21.87■■□□□ 1.09
COL9A1-210ENST00000493682 TMEM39BQ9GZU3 492 aa21.87■■□□□ 1.09
COL9A1-210ENST00000493682 PDE8BO95263 885 aa21.86■■□□□ 1.09
COL9A1-210ENST00000493682 CAVIN4Q5BKX8 364 aa21.86■■□□□ 1.09
COL9A1-210ENST00000493682 PRPF38BQ5VTL8 546 aaKnown RBP21.86■■□□□ 1.09
COL9A1-210ENST00000493682 OTOFQ9HC10 1997 aa21.86■■□□□ 1.09
COL9A1-210ENST00000493682 FRAT2O75474 233 aaPredicted RBP21.85■■□□□ 1.09
COL9A1-210ENST00000493682 TNNI2P48788 182 aa21.85■■□□□ 1.09
COL9A1-210ENST00000493682 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.85■■□□□ 1.09
COL9A1-210ENST00000493682 KLHDC4Q8TBB5 520 aa21.85■■□□□ 1.09
COL9A1-210ENST00000493682 TBC1D22AQ8WUA7 517 aa21.85■■□□□ 1.09
COL9A1-210ENST00000493682 ERO1AQ96HE7 468 aa21.85■■□□□ 1.09
COL9A1-210ENST00000493682 PTPRCP08575 1304 aa21.84■■□□□ 1.09
COL9A1-210ENST00000493682 HDLBPQ00341 1268 aaKnown RBP21.84■■□□□ 1.09
COL9A1-210ENST00000493682 CD99L2Q8TCZ2 262 aa21.84■■□□□ 1.09
COL9A1-210ENST00000493682 MS4A4AQ96JQ5 239 aa21.84■■□□□ 1.09
COL9A1-210ENST00000493682 BCAMP50895 628 aa21.83■■□□□ 1.09
COL9A1-210ENST00000493682 MAP3K9P80192 1104 aa21.83■■□□□ 1.09
COL9A1-210ENST00000493682 VGLL4Q14135 290 aa21.83■■□□□ 1.09
COL9A1-210ENST00000493682 TEKT1Q969V4 418 aa21.83■■□□□ 1.09
COL9A1-210ENST00000493682 USP44Q9H0E7 712 aa21.83■■□□□ 1.09
COL9A1-210ENST00000493682 NPM3O75607 178 aaKnown RBP21.82■■□□□ 1.08
COL9A1-210ENST00000493682 CACNB3P54284 484 aa21.82■■□□□ 1.08
COL9A1-210ENST00000493682 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.82■■□□□ 1.08
COL9A1-210ENST00000493682 SSH1Q8WYL5 1049 aa21.82■■□□□ 1.08
COL9A1-210ENST00000493682 HTTP42858 3142 aa21.82■■□□□ 1.08
COL9A1-210ENST00000493682 SP3Q02447 781 aa21.81■■□□□ 1.08
COL9A1-210ENST00000493682 BRI3BPQ8WY22 251 aa21.81■■□□□ 1.08
COL9A1-210ENST00000493682 ZDHHC15Q96MV8 337 aa21.81■■□□□ 1.08
COL9A1-210ENST00000493682 PTPN22Q9Y2R2 807 aa21.81■■□□□ 1.08
COL9A1-210ENST00000493682 CSADQ9Y600 493 aa21.81■■□□□ 1.08
COL9A1-210ENST00000493682 E9PSI1 815 aa21.8■■□□□ 1.08
COL9A1-210ENST00000493682 FGFR2P21802 821 aa21.8■■□□□ 1.08
COL9A1-210ENST00000493682 CAP1Q01518 475 aa21.8■■□□□ 1.08
COL9A1-210ENST00000493682 PUM3Q15397 648 aaKnown RBP21.8■■□□□ 1.08
COL9A1-210ENST00000493682 INTS3Q68E01 1043 aaKnown RBP21.8■■□□□ 1.08
COL9A1-210ENST00000493682 MRIQ9BWK5 157 aa21.8■■□□□ 1.08
COL9A1-210ENST00000493682 EFCC1Q9HA90 598 aa21.8■■□□□ 1.08
COL9A1-210ENST00000493682 KIF16BQ96L93 1317 aa21.8■■□□□ 1.08
COL9A1-210ENST00000493682 IFIT1P09914 478 aaKnown RBP21.79■■□□□ 1.08
COL9A1-210ENST00000493682 GTF2A2P52657 109 aa21.79■■□□□ 1.08
COL9A1-210ENST00000493682 APOBEC3HQ6NTF7 200 aaKnown RBP21.79■■□□□ 1.08
COL9A1-210ENST00000493682 OTUD5Q96G74 571 aa21.79■■□□□ 1.08
COL9A1-210ENST00000493682 CCL15-CCL14A0A0B4J2E2 113 aa21.78■■□□□ 1.08
COL9A1-210ENST00000493682 POTEFA5A3E0 1075 aa21.78■■□□□ 1.08
COL9A1-210ENST00000493682 CCL15Q16663 113 aa21.78■■□□□ 1.08
COL9A1-210ENST00000493682 TMOD2Q9NZR1 351 aa21.78■■□□□ 1.08
COL9A1-210ENST00000493682 SUGT1Q9Y2Z0 365 aa21.78■■□□□ 1.08
COL9A1-210ENST00000493682 MAST3O60307 1309 aa21.78■■□□□ 1.08
COL9A1-210ENST00000493682 SPDYE5A6NIY4 337 aa21.77■■□□□ 1.08
COL9A1-210ENST00000493682 RFX5P48382 616 aaPredicted RBP21.77■■□□□ 1.08
COL9A1-210ENST00000493682 TAF1CQ15572 869 aaPredicted RBP21.77■■□□□ 1.08
COL9A1-210ENST00000493682 FKBP1CQ5VVH2 108 aa21.77■■□□□ 1.08
COL9A1-210ENST00000493682 FAM83AQ86UY5 434 aa21.77■■□□□ 1.08
COL9A1-210ENST00000493682 SNCAIPQ9Y6H5 919 aa21.77■■□□□ 1.08
COL9A1-210ENST00000493682 EYA2O00167 538 aa21.76■■□□□ 1.07
COL9A1-210ENST00000493682 SLFN5Q08AF3 891 aa21.76■■□□□ 1.07
COL9A1-210ENST00000493682 FAM43AQ8N2R8 423 aa21.76■■□□□ 1.07
COL9A1-210ENST00000493682 ARMC5Q96C12 935 aa21.76■■□□□ 1.07
COL9A1-210ENST00000493682 WRNIP1Q96S55 665 aa21.76■■□□□ 1.07
COL9A1-210ENST00000493682 ZFYVE28Q9HCC9 887 aa21.76■■□□□ 1.07
COL9A1-210ENST00000493682 HHIPL2Q6UWX4 724 aa21.75■■□□□ 1.07
COL9A1-210ENST00000493682 ZKSCAN4Q969J2 545 aaPredicted RBP21.75■■□□□ 1.07
COL9A1-210ENST00000493682 HOOK2Q96ED9 719 aa21.75■■□□□ 1.07
COL9A1-210ENST00000493682 SLC5A1P13866 664 aa21.74■■□□□ 1.07
COL9A1-210ENST00000493682 ALDH1L2Q3SY69 923 aa21.74■■□□□ 1.07
COL9A1-210ENST00000493682 ERO1BQ86YB8 467 aa21.74■■□□□ 1.07
COL9A1-210ENST00000493682 LPIN2Q92539 896 aa21.74■■□□□ 1.07
COL9A1-210ENST00000493682 CETPP11597 493 aa21.73■■□□□ 1.07
COL9A1-210ENST00000493682 ATG9AQ7Z3C6 839 aa21.73■■□□□ 1.07
COL9A1-210ENST00000493682 WDR66Q8TBY9 1149 aa21.73■■□□□ 1.07
COL9A1-210ENST00000493682 PCDH10Q9P2E7 1040 aa21.73■■□□□ 1.07
COL9A1-210ENST00000493682 ARHGEF6Q15052 776 aa21.72■■□□□ 1.07
COL9A1-210ENST00000493682 DCAF15Q66K64 600 aa21.72■■□□□ 1.07
COL9A1-210ENST00000493682 SMC4Q9NTJ3 1288 aa21.72■■□□□ 1.07
COL9A1-210ENST00000493682 RPAP1Q9BWH6 1393 aaPredicted RBP21.72■■□□□ 1.07
COL9A1-210ENST00000493682 BTBD19C9JJ37 291 aa21.71■■□□□ 1.07
COL9A1-210ENST00000493682 IRF6O14896 467 aa21.71■■□□□ 1.07
COL9A1-210ENST00000493682 SNAPC2Q13487 334 aa21.71■■□□□ 1.07
COL9A1-210ENST00000493682 CDCA7LQ96GN5 454 aa21.71■■□□□ 1.07
COL9A1-210ENST00000493682 CENPFP49454 3210 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms