RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 STX10O60499 249 aa13.43□□□□□ -0.26
HDAC4-210ENST00000493582 KCNG4Q8TDN1 519 aa13.43□□□□□ -0.26
HDAC4-210ENST00000493582 MAP3K2Q9Y2U5 619 aa13.43□□□□□ -0.26
HDAC4-210ENST00000493582 EP400NLQ6ZTU2 488 aa13.43□□□□□ -0.26
HDAC4-210ENST00000493582 CEP170BQ9Y4F5 1589 aaPredicted RBP13.43□□□□□ -0.26
HDAC4-210ENST00000493582 C3P01024 1663 aa13.43□□□□□ -0.26
HDAC4-210ENST00000493582 ERLIN1O75477 346 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 APPP05067 770 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 PDIA3P30101 505 aaKnown RBP13.42□□□□□ -0.26
HDAC4-210ENST00000493582 USP5P45974 858 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 RAB21Q9UL25 225 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 U3KPZ7 1027 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-210ENST00000493582 SALL1Q9NSC2 1324 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 KDRP35968 1356 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 CARMIL3Q8ND23 1372 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 JCADQ9P266 1359 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 LRRIQ3A6PVS8 624 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-210ENST00000493582 CT47A1Q5JQC4 288 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-210ENST00000493582 AXDND1Q5T1B0 1012 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-210ENST00000493582 TBX2Q13207 712 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-210ENST00000493582 OSCARQ8IYS5 282 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 LTV1Q96GA3 475 aaPredicted RBP13.42□□□□□ -0.26
HDAC4-210ENST00000493582 KAZALD1Q96I82 304 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 SUCLG2Q96I99 432 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 MROH7-TTC4A0A0A0MT08 1334 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 IGSF1Q8N6C5 1336 aa13.42□□□□□ -0.26
HDAC4-210ENST00000493582 RGPD1P0DJD0 1748 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 METP08581 1390 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 SOWAHDA6NJG2 315 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 MMS22LQ6ZRQ5 1243 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 TADA2BQ86TJ2 420 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 MSANTD4Q8NCY6 345 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 GPHNQ9NQX3 736 aaPredicted RBP13.41□□□□□ -0.26
HDAC4-210ENST00000493582 CDC23Q9UJX2 597 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 CCDC9Q9Y3X0 531 aaKnown RBP13.41□□□□□ -0.26
HDAC4-210ENST00000493582 OVOS2A0A0J9YW53 1432 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 OVOS2Q6IE36 1432 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 PPFIA4O75335 1185 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 MYCNP04198 464 aaPredicted RBP13.41□□□□□ -0.26
HDAC4-210ENST00000493582 CDC27P30260 824 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 SYKP43405 635 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 PDE4BQ07343 736 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 PLEKHO1Q53GL0 409 aaPredicted RBP13.41□□□□□ -0.26
HDAC4-210ENST00000493582 SYNE3Q6ZMZ3 975 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 EFCAB13Q8IY85 973 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 FAM71BQ8TC56 605 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 POLR3EQ9NVU0 708 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 AKAP12Q02952 1782 aa13.41□□□□□ -0.26
HDAC4-210ENST00000493582 CMA1P23946 247 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 EIF4A1P60842 406 aaKnown RBP13.4□□□□□ -0.26
HDAC4-210ENST00000493582 DNAJC21Q5F1R6 531 aaKnown RBP13.4□□□□□ -0.26
HDAC4-210ENST00000493582 MYSM1Q5VVJ2 828 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 MCTP2Q6DN12 878 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 RAB11FIP4Q86YS3 637 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 TUBE1Q9UJT0 475 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 KIF4BQ2VIQ3 1234 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 ZNF569Q5MCW4 686 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 FOXP4Q8IVH2 680 aaPredicted RBP13.4□□□□□ -0.26
HDAC4-210ENST00000493582 SUGP1Q8IWZ8 645 aaKnown RBP13.4□□□□□ -0.26
HDAC4-210ENST00000493582 CACNA1FO60840 1977 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 KIF28PB7ZC32 967 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 YEATS4O95619 227 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 LIG3P49916 1009 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 EXOSC10Q01780 885 aaKnown RBP13.4□□□□□ -0.26
HDAC4-210ENST00000493582 SPECC1LQ69YQ0 1117 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 OLFM4Q6UX06 510 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 DDX46Q7L014 1031 aaKnown RBP13.4□□□□□ -0.26
HDAC4-210ENST00000493582 CEP112Q8N8E3 955 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 KAT2BQ92831 832 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 C8orf76Q96K31 380 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 CLIC6Q96NY7 704 aa13.4□□□□□ -0.26
HDAC4-210ENST00000493582 ZNF609O15014 1411 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 ABCC6O95255 1503 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 RNF40O75150 1001 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 CCDC175P0C221 793 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 MCMDC2Q4G0Z9 681 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 TTLL5Q6EMB2 1281 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 CCDC91Q7Z6B0 441 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 USHBP1Q8N6Y0 703 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 CXorf56Q9H5V9 222 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 ITSN1Q15811 1721 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 BMP6P22004 513 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 PROSER3Q2NL68 480 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 ANO1Q5XXA6 986 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 CPLX3Q8WVH0 158 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 RIN2Q8WYP3 895 aaPredicted RBP13.39□□□□□ -0.27
HDAC4-210ENST00000493582 LGR6Q9HBX8 967 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 AGLP35573 1532 aa13.39□□□□□ -0.27
HDAC4-210ENST00000493582 A0A087WUV0 522 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 CPP00450 1065 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 ABL1P00519 1130 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 HMGB1P09429 215 aaKnown RBP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 C19orf44Q9H6X5 657 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 MYH15Q9Y2K3 1946 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 POTEB2H3BUK9 544 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 KIF5CO60282 957 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 SWT1Q5T5J6 900 aaKnown RBP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 RAD9BQ6WBX8 426 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 NOA1Q8NC60 698 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms