RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 RASIP1Q5U651 963 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 CCDC84Q86UT8 332 aaPredicted RBP6.47□□□□□ -1.37
VPS13A-212ENST00000493341 TMEM102Q8N9M5 508 aaPredicted RBP6.47□□□□□ -1.37
VPS13A-212ENST00000493341 OR6P1Q8NGX9 317 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 FEZ1Q99689 392 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 IRF2BPLQ9H1B7 796 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 CBX8Q9HC52 389 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 ZNRF3Q9ULT6 936 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 SAMM50Q9Y512 469 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 PCDHGC4Q9Y5F7 938 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 KDM2BQ8NHM5 1336 aa6.46□□□□□ -1.37
VPS13A-212ENST00000493341 J3QW42 95 aa6.46□□□□□ -1.38
VPS13A-212ENST00000493341 GJB6O95452 261 aa6.46□□□□□ -1.38
VPS13A-212ENST00000493341 S100BP04271 92 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-212ENST00000493341 MAPTP10636 758 aaKnown RBP6.46□□□□□ -1.38
VPS13A-212ENST00000493341 TKFCQ3LXA3 575 aa6.46□□□□□ -1.38
VPS13A-212ENST00000493341 RPS26P11Q5JNZ5 115 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-212ENST00000493341 HFE2Q6ZVN8 426 aa6.46□□□□□ -1.38
VPS13A-212ENST00000493341 LSRQ86X29 649 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-212ENST00000493341 REXO1Q8N1G1 1221 aaKnown RBP6.46□□□□□ -1.38
VPS13A-212ENST00000493341 STAG1Q8WVM7 1258 aa6.46□□□□□ -1.38
VPS13A-212ENST00000493341 MUC3BQ9H195 1237 aa6.46□□□□□ -1.38
VPS13A-212ENST00000493341 RASSF4Q9H2L5 321 aa6.46□□□□□ -1.38
VPS13A-212ENST00000493341 IGFLR1Q9H665 355 aa6.46□□□□□ -1.38
VPS13A-212ENST00000493341 SOS2Q07890 1332 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-212ENST00000493341 CILPO75339 1184 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 BMP1P13497 986 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 BMP6P22004 513 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 MASP1P48740 699 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 MLLT1Q03111 559 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-212ENST00000493341 C2orf27AQ580R0 203 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 TMX1Q9H3N1 280 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 MARK1Q9P0L2 795 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 CHPF2Q9P2E5 772 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 CYP8B1Q9UNU6 501 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 GRIN3BO60391 1043 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 MAP3K6O95382 1288 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 IMPDH2P12268 514 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 HCLS1P14317 486 aaPredicted RBP6.45□□□□□ -1.38
VPS13A-212ENST00000493341 ATP11AP98196 1134 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 TNP2Q05952 138 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 RUFY4Q6ZNE9 571 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 SPATC1Q76KD6 591 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 CERS3Q8IU89 383 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 SLC30A3Q99726 388 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 PCDHB14Q9Y5E9 798 aa6.45□□□□□ -1.38
VPS13A-212ENST00000493341 CCDC181Q5TID7 509 aa6.44□□□□□ -1.38
VPS13A-212ENST00000493341 GRIN3AQ8TCU5 1115 aa6.44□□□□□ -1.38
VPS13A-212ENST00000493341 THAP3Q8WTV1 239 aaPredicted RBP6.44□□□□□ -1.38
VPS13A-212ENST00000493341 PBX4Q9BYU1 374 aa6.44□□□□□ -1.38
VPS13A-212ENST00000493341 CLEC4MQ9H2X3 399 aaPredicted RBP6.44□□□□□ -1.38
VPS13A-212ENST00000493341 LOC102724428A0A0B4J2F2 783 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 DIAPH1O60610 1272 aaKnown RBP6.43□□□□□ -1.38
VPS13A-212ENST00000493341 CASP7P55210 303 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 SIK1P57059 783 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 SSRP1Q08945 709 aaKnown RBP6.43□□□□□ -1.38
VPS13A-212ENST00000493341 TCEA2Q15560 299 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 C6orf15Q6UXA7 325 aaPredicted RBP6.43□□□□□ -1.38
VPS13A-212ENST00000493341 TRIM67Q6ZTA4 783 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 POP1Q99575 1024 aaKnown RBP6.43□□□□□ -1.38
VPS13A-212ENST00000493341 SUGT1Q9Y2Z0 365 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 B2RBV5 119 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 ASMTLO95671 621 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 THBS1P07996 1170 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 CD33P20138 364 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 NME2P22392 152 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 NRLP54845 237 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 LAMC2Q13753 1193 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 LBRQ14739 615 aaKnown RBP6.43□□□□□ -1.38
VPS13A-212ENST00000493341 LRRC14Q15048 493 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 LLGL2Q6P1M3 1020 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 SULF2Q8IWU5 870 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 BSNDQ8WZ55 320 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 EFCC1Q9HA90 598 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 DNMT3LQ9UJW3 386 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 PTCH2Q9Y6C5 1203 aa6.43□□□□□ -1.38
VPS13A-212ENST00000493341 BNIP3LO60238 219 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 GHRHP01286 108 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 PDGFRBP09619 1106 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 HOXD8P13378 290 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-212ENST00000493341 C21orf62-AS1Q17RA5 79 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 HSP90AB2PQ58FF8 381 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 CEP135Q66GS9 1140 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 RBBP8NLQ8NC74 664 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-212ENST00000493341 STK35Q8TDR2 534 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 NUCKS1Q9H1E3 243 aaKnown RBP6.42□□□□□ -1.38
VPS13A-212ENST00000493341 HCN2Q9UL51 889 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 CD2APQ9Y5K6 639 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 SENP3-EIF4A1A0A087X0R7 540 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 ZBTB42B2RXF5 422 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 PCDH1Q08174 1060 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 TBC1D8BQ0IIM8 1120 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 ABHD17AQ96GS6 310 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 ZFP42Q96MM3 310 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 RBSNQ9H1K0 784 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 ANTXR1Q9H6X2 564 aa6.42□□□□□ -1.38
VPS13A-212ENST00000493341 EIF2AK2P19525 551 aaKnown RBP6.41□□□□□ -1.38
VPS13A-212ENST00000493341 CNGA1P29973 690 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 PRR20EP86478 221 aa6.41□□□□□ -1.38
VPS13A-212ENST00000493341 PRR20CP86479 221 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms