RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 EPHA10Q5JZY3 1008 aa16.66■□□□□ 0.26
HDAC3-213ENST00000492506 TMEM106CQ9BVX2 250 aa16.66■□□□□ 0.26
HDAC3-213ENST00000492506 TDRD3Q9H7E2 651 aaKnown RBP16.66■□□□□ 0.26
HDAC3-213ENST00000492506 DEKP35659 375 aaKnown RBP16.65■□□□□ 0.26
HDAC3-213ENST00000492506 RBM5P52756 815 aaKnown RBP eCLIP16.65■□□□□ 0.26
HDAC3-213ENST00000492506 VGLL4Q14135 290 aa16.65■□□□□ 0.26
HDAC3-213ENST00000492506 WWC1Q8IX03 1113 aa16.65■□□□□ 0.26
HDAC3-213ENST00000492506 FAM43AQ8N2R8 423 aa16.65■□□□□ 0.26
HDAC3-213ENST00000492506 TDRD7Q8NHU6 1098 aaKnown RBP16.65■□□□□ 0.26
HDAC3-213ENST00000492506 UBE2Q2Q8WVN8 375 aa16.65■□□□□ 0.26
HDAC3-213ENST00000492506 ZNF594Q96JF6 807 aaPredicted RBP16.65■□□□□ 0.26
HDAC3-213ENST00000492506 SERPINA10Q9UK55 444 aa16.65■□□□□ 0.26
HDAC3-213ENST00000492506 CCL15-CCL14A0A0B4J2E2 113 aa16.64■□□□□ 0.25
HDAC3-213ENST00000492506 TNFAIP1Q13829 316 aa16.64■□□□□ 0.25
HDAC3-213ENST00000492506 TAF1CQ15572 869 aaPredicted RBP16.64■□□□□ 0.25
HDAC3-213ENST00000492506 CCL15Q16663 113 aa16.64■□□□□ 0.25
HDAC3-213ENST00000492506 SLC9C1Q4G0N8 1177 aa16.64■□□□□ 0.25
HDAC3-213ENST00000492506 MFSD14BQ5SR56 506 aa16.64■□□□□ 0.25
HDAC3-213ENST00000492506 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.64■□□□□ 0.25
HDAC3-213ENST00000492506 ZFYVE28Q9HCC9 887 aa16.64■□□□□ 0.25
HDAC3-213ENST00000492506 TTF2Q9UNY4 1162 aaKnown RBP16.64■□□□□ 0.25
HDAC3-213ENST00000492506 GTF2A2P52657 109 aa16.63■□□□□ 0.25
HDAC3-213ENST00000492506 MAP3K9P80192 1104 aa16.63■□□□□ 0.25
HDAC3-213ENST00000492506 BEND3Q5T5X7 828 aa16.63■□□□□ 0.25
HDAC3-213ENST00000492506 LMBR1LQ6UX01 489 aa16.63■□□□□ 0.25
HDAC3-213ENST00000492506 DZIP1LQ8IYY4 767 aaKnown RBP16.63■□□□□ 0.25
HDAC3-213ENST00000492506 TMEM39BQ9GZU3 492 aa16.63■□□□□ 0.25
HDAC3-213ENST00000492506 PLIN1O60240 522 aa16.62■□□□□ 0.25
HDAC3-213ENST00000492506 GRIK5Q16478 980 aa16.62■□□□□ 0.25
HDAC3-213ENST00000492506 LDHAL6AQ6ZMR3 332 aa16.62■□□□□ 0.25
HDAC3-213ENST00000492506 NBPF11Q86T75 865 aa16.62■□□□□ 0.25
HDAC3-213ENST00000492506 OTUD5Q96G74 571 aa16.62■□□□□ 0.25
HDAC3-213ENST00000492506 FAM84BQ96KN1 310 aaPredicted RBP16.62■□□□□ 0.25
HDAC3-213ENST00000492506 ARHGAP39Q9C0H5 1083 aa16.62■□□□□ 0.25
HDAC3-213ENST00000492506 CHMP3Q9Y3E7 222 aa16.62■□□□□ 0.25
HDAC3-213ENST00000492506 IL16Q14005 1332 aa16.62■□□□□ 0.25
HDAC3-213ENST00000492506 TCP10L2B9ZVM9 353 aa16.61■□□□□ 0.25
HDAC3-213ENST00000492506 F6X3S4 739 aa16.61■□□□□ 0.25
HDAC3-213ENST00000492506 H0YGN5 161 aa16.61■□□□□ 0.25
HDAC3-213ENST00000492506 CCER2I3L3R5 266 aa16.61■□□□□ 0.25
HDAC3-213ENST00000492506 VAMP4O75379 141 aa16.61■□□□□ 0.25
HDAC3-213ENST00000492506 CRKP46108 304 aa16.61■□□□□ 0.25
HDAC3-213ENST00000492506 GYG1P46976 350 aa16.61■□□□□ 0.25
HDAC3-213ENST00000492506 ARHGEF6Q15052 776 aa16.61■□□□□ 0.25
HDAC3-213ENST00000492506 SPDYE5A6NIY4 337 aa16.6■□□□□ 0.25
HDAC3-213ENST00000492506 TLR2O60603 784 aa16.6■□□□□ 0.25
HDAC3-213ENST00000492506 HIBADHP31937 336 aaKnown RBP16.6■□□□□ 0.25
HDAC3-213ENST00000492506 UBE4AQ14139 1066 aa16.6■□□□□ 0.25
HDAC3-213ENST00000492506 CCDC57Q2TAC2 916 aa16.6■□□□□ 0.25
HDAC3-213ENST00000492506 SLC4A8Q2Y0W8 1093 aa16.6■□□□□ 0.25
HDAC3-213ENST00000492506 SH3TC2Q8TF17 1288 aa16.6■□□□□ 0.25
HDAC3-213ENST00000492506 CNNM1Q9NRU3 951 aa16.6■□□□□ 0.25
HDAC3-213ENST00000492506 SNCAIPQ9Y6H5 919 aa16.6■□□□□ 0.25
HDAC3-213ENST00000492506 MYCP01106 439 aaPredicted RBP16.59■□□□□ 0.25
HDAC3-213ENST00000492506 LACTBP83111 547 aaPredicted RBP16.59■□□□□ 0.25
HDAC3-213ENST00000492506 CCDC184Q52MB2 194 aa16.59■□□□□ 0.25
HDAC3-213ENST00000492506 ZCCHC17Q9NP64 241 aaKnown RBP16.59■□□□□ 0.25
HDAC3-213ENST00000492506 CSADQ9Y600 493 aa16.59■□□□□ 0.25
HDAC3-213ENST00000492506 BTBD19C9JJ37 291 aa16.58■□□□□ 0.24
HDAC3-213ENST00000492506 GRM8O00222 908 aa16.58■□□□□ 0.24
HDAC3-213ENST00000492506 TNNI2P48788 182 aa16.58■□□□□ 0.24
HDAC3-213ENST00000492506 PUS3Q9BZE2 481 aaKnown RBP16.58■□□□□ 0.24
HDAC3-213ENST00000492506 MGAMO43451 1857 aa16.58■□□□□ 0.24
HDAC3-213ENST00000492506 IRF6O14896 467 aa16.57■□□□□ 0.24
HDAC3-213ENST00000492506 CETPP11597 493 aa16.57■□□□□ 0.24
HDAC3-213ENST00000492506 CTGFP29279 349 aa16.57■□□□□ 0.24
HDAC3-213ENST00000492506 CACNB3P54284 484 aa16.57■□□□□ 0.24
HDAC3-213ENST00000492506 TAF7LQ5H9L4 462 aa16.57■□□□□ 0.24
HDAC3-213ENST00000492506 SHISA4Q96DD7 197 aa16.57■□□□□ 0.24
HDAC3-213ENST00000492506 KAZALD1Q96I82 304 aa16.57■□□□□ 0.24
HDAC3-213ENST00000492506 MYH13Q9UKX3 1938 aa16.57■□□□□ 0.24
HDAC3-213ENST00000492506 GNRH1P01148 92 aa16.56■□□□□ 0.24
HDAC3-213ENST00000492506 HDLBPQ00341 1268 aaKnown RBP16.56■□□□□ 0.24
HDAC3-213ENST00000492506 NCBP3Q53F19 620 aaKnown RBP16.56■□□□□ 0.24
HDAC3-213ENST00000492506 FBXO33Q7Z6M2 555 aa16.56■□□□□ 0.24
HDAC3-213ENST00000492506 ERO1BQ86YB8 467 aa16.56■□□□□ 0.24
HDAC3-213ENST00000492506 ZKSCAN4Q969J2 545 aaPredicted RBP16.56■□□□□ 0.24
HDAC3-213ENST00000492506 RIPOR2Q9Y4F9 1068 aa16.56■□□□□ 0.24
HDAC3-213ENST00000492506 PPIL2Q13356 520 aa16.55■□□□□ 0.24
HDAC3-213ENST00000492506 MTFR1Q15390 333 aa16.55■□□□□ 0.24
HDAC3-213ENST00000492506 C17orf99Q6UX52 265 aa16.55■□□□□ 0.24
HDAC3-213ENST00000492506 WRNIP1Q96S55 665 aa16.55■□□□□ 0.24
HDAC3-213ENST00000492506 IQSEC3Q9UPP2 1182 aaPredicted RBP16.55■□□□□ 0.24
HDAC3-213ENST00000492506 COL6A3P12111 3177 aa16.55■□□□□ 0.24
HDAC3-213ENST00000492506 AK9Q5TCS8 1911 aa16.55■□□□□ 0.24
HDAC3-213ENST00000492506 PRMT2P55345 433 aa16.54■□□□□ 0.24
HDAC3-213ENST00000492506 EXOSC9Q06265 439 aaKnown RBP16.54■□□□□ 0.24
HDAC3-213ENST00000492506 SNAPC2Q13487 334 aa16.54■□□□□ 0.24
HDAC3-213ENST00000492506 KIF22Q14807 665 aa16.54■□□□□ 0.24
HDAC3-213ENST00000492506 UBE2Q1Q7Z7E8 422 aa16.54■□□□□ 0.24
HDAC3-213ENST00000492506 FAM83AQ86UY5 434 aa16.54■□□□□ 0.24
HDAC3-213ENST00000492506 ZDHHC15Q96MV8 337 aa16.54■□□□□ 0.24
HDAC3-213ENST00000492506 MRIQ9BWK5 157 aa16.54■□□□□ 0.24
HDAC3-213ENST00000492506 LAMA3Q16787 3333 aa16.54■□□□□ 0.24
HDAC3-213ENST00000492506 ADGRA2Q96PE1 1338 aa16.53■□□□□ 0.24
HDAC3-213ENST00000492506 WDHD1O75717 1129 aaPredicted RBP16.53■□□□□ 0.24
HDAC3-213ENST00000492506 FKBP1CQ5VVH2 108 aa16.53■□□□□ 0.24
HDAC3-213ENST00000492506 APOBEC3HQ6NTF7 200 aaKnown RBP16.53■□□□□ 0.24
HDAC3-213ENST00000492506 CHRDL2Q6WN34 429 aa16.53■□□□□ 0.24
HDAC3-213ENST00000492506 TEKT1Q969V4 418 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms