RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 ARAP1Q96P48 1450 aa14.8□□□□□ -0.04
COL6A3-212ENST00000491769 DPY19L2Q6NUT2 758 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 ADCY5O95622 1261 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 HIBADHP31937 336 aaKnown RBP14.79□□□□□ -0.04
COL6A3-212ENST00000491769 CCT6AP40227 531 aaKnown RBP14.79□□□□□ -0.04
COL6A3-212ENST00000491769 SPAG1Q07617 926 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 CUL4BQ13620 913 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 PAGR1Q9BTK6 254 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 PPIP5K1Q6PFW1 1433 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 ESPNB1AK53 854 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 TFCP2Q12800 502 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 ALDH1L1O75891 902 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 PDE6BP35913 854 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 NAP1L4Q99733 375 aaKnown RBP14.79□□□□□ -0.04
COL6A3-212ENST00000491769 UBXN1Q04323 297 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 MEIS3Q99687 375 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 C19orf44Q9H6X5 657 aa14.79□□□□□ -0.04
COL6A3-212ENST00000491769 STX17P56962 302 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 NSMFQ6X4W1 530 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 CDAN1Q8IWY9 1227 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 GTF3C6Q969F1 213 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 KRT19P08727 400 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 EPB41P11171 864 aaKnown RBP14.78□□□□□ -0.04
COL6A3-212ENST00000491769 DNM2P50570 870 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 IRX5P78411 483 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-212ENST00000491769 INF2Q27J81 1249 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 IL27Q8NEV9 243 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 KIFAP3Q92845 792 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 USP21Q9UK80 565 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 CSADQ9Y600 493 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 MAST3O60307 1309 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 ZSCAN30Q86W11 494 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 MBD4O95243 580 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 HCLS1P14317 486 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-212ENST00000491769 USH1GQ495M9 461 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 SKAP1Q86WV1 359 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 NSMCE1Q8WV22 266 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 MRPS27Q92552 414 aaKnown RBP14.78□□□□□ -0.04
COL6A3-212ENST00000491769 CLSTN2Q9H4D0 955 aa14.78□□□□□ -0.04
COL6A3-212ENST00000491769 RPL13P26373 211 aaKnown RBP14.77□□□□□ -0.04
COL6A3-212ENST00000491769 CWF19L2Q2TBE0 894 aaKnown RBP14.77□□□□□ -0.04
COL6A3-212ENST00000491769 LEO1Q8WVC0 666 aaPredicted RBP14.77□□□□□ -0.04
COL6A3-212ENST00000491769 NCOA1Q15788 1441 aa14.77□□□□□ -0.04
COL6A3-212ENST00000491769 CCDC160A6NGH7 325 aa14.77□□□□□ -0.04
COL6A3-212ENST00000491769 GIMAP6Q6P9H5 292 aa14.77□□□□□ -0.04
COL6A3-212ENST00000491769 RBM28Q9NW13 759 aaKnown RBP14.77□□□□□ -0.04
COL6A3-212ENST00000491769 FANCAO15360 1455 aa14.77□□□□□ -0.04
COL6A3-212ENST00000491769 C11orf95C9JLR9 678 aaPredicted RBP14.77□□□□□ -0.04
COL6A3-212ENST00000491769 SLC5A4Q9NY91 659 aa14.77□□□□□ -0.04
COL6A3-212ENST00000491769 ABL1P00519 1130 aa14.77□□□□□ -0.05
COL6A3-212ENST00000491769 UBE2HP62256 183 aa14.77□□□□□ -0.05
COL6A3-212ENST00000491769 NOC2LQ9Y3T9 749 aaKnown RBP14.77□□□□□ -0.05
COL6A3-212ENST00000491769 ZNF526Q8TF50 670 aaPredicted RBP14.77□□□□□ -0.05
COL6A3-212ENST00000491769 STMN4Q9H169 189 aaPredicted RBP14.77□□□□□ -0.05
COL6A3-212ENST00000491769 TTLL3Q9Y4R7 772 aa14.77□□□□□ -0.05
COL6A3-212ENST00000491769 PPIP5K2O43314 1243 aa14.77□□□□□ -0.05
COL6A3-212ENST00000491769 CSPG5O95196 566 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 APOBRQ0VD83 1088 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 SV2BQ7L1I2 683 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 CAPZA3Q96KX2 299 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 CCDC42Q96M95 316 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 UIMC1Q96RL1 719 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 NSD2O96028 1365 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 NCAPH2Q6IBW4 605 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 DCAF5Q96JK2 942 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 SEL1L2Q5TEA6 688 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 AFG3L2Q9Y4W6 797 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.76□□□□□ -0.05
COL6A3-212ENST00000491769 ARHGEF35A5YM69 484 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 ZSCAN22P10073 491 aaPredicted RBP14.76□□□□□ -0.05
COL6A3-212ENST00000491769 CCDC125Q86Z20 511 aa14.76□□□□□ -0.05
COL6A3-212ENST00000491769 ZFP91Q96JP5 570 aaPredicted RBP14.76□□□□□ -0.05
COL6A3-212ENST00000491769 PPANQ9NQ55 473 aaKnown RBP14.76□□□□□ -0.05
COL6A3-212ENST00000491769 HACE1Q8IYU2 909 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 TBC1D31Q96DN5 1066 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 TRIM7Q9C029 511 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 KCNK9Q9NPC2 374 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 CTAGE15A4D2H0 777 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 CCNT1O60563 726 aaKnown RBP14.75□□□□□ -0.05
COL6A3-212ENST00000491769 CTAGE8P0CG41 777 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 KIF5AQ12840 1032 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 DLGAP5Q15398 846 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 ZNF174Q15697 407 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 CTAGE6Q86UF2 777 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 CTAGE4Q8IX94 777 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 RIOK1Q9BRS2 568 aaKnown RBP14.75□□□□□ -0.05
COL6A3-212ENST00000491769 C14orf93Q9H972 538 aaKnown RBP14.75□□□□□ -0.05
COL6A3-212ENST00000491769 GADL1Q6ZQY3 521 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 AOPEPQ8N6M6 819 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 PPP1R9BQ96SB3 815 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 SRRTQ9BXP5 876 aaKnown RBP14.75□□□□□ -0.05
COL6A3-212ENST00000491769 DKC1O60832 514 aaKnown RBP eCLIP14.75□□□□□ -0.05
COL6A3-212ENST00000491769 FAM89AQ96GI7 184 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 CACYBPQ9HB71 228 aaKnown RBP14.75□□□□□ -0.05
COL6A3-212ENST00000491769 EXOC7Q9UPT5 735 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 STK10O94804 968 aaKnown RBP14.75□□□□□ -0.05
COL6A3-212ENST00000491769 ANO6Q4KMQ2 910 aa14.75□□□□□ -0.05
COL6A3-212ENST00000491769 MKRN1Q9UHC7 482 aaKnown RBP14.75□□□□□ -0.05
COL6A3-212ENST00000491769 RTL1A6NKG5 1358 aa14.74□□□□□ -0.05
COL6A3-212ENST00000491769 USP48Q86UV5 1035 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms