RNA–Protein interactions for RNA: ENST00000491629.5

USF1-206, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 933 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-206ENST00000491629 OTUD7BQ6GQQ9 843 aa16.85■□□□□ 0.29
USF1-206ENST00000491629 FAM84BQ96KN1 310 aaPredicted RBP16.85■□□□□ 0.29
USF1-206ENST00000491629 TTF2Q9UNY4 1162 aaKnown RBP16.85■□□□□ 0.29
USF1-206ENST00000491629 CHMP3Q9Y3E7 222 aa16.85■□□□□ 0.29
USF1-206ENST00000491629 IL16Q14005 1332 aa16.85■□□□□ 0.29
USF1-206ENST00000491629 MYH13Q9UKX3 1938 aa16.84■□□□□ 0.29
USF1-206ENST00000491629 LDHAL6AQ6ZMR3 332 aa16.84■□□□□ 0.29
USF1-206ENST00000491629 DZIP1LQ8IYY4 767 aaKnown RBP16.84■□□□□ 0.29
USF1-206ENST00000491629 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.84■□□□□ 0.29
USF1-206ENST00000491629 PUS3Q9BZE2 481 aaKnown RBP16.84■□□□□ 0.29
USF1-206ENST00000491629 ARHGAP39Q9C0H5 1083 aa16.84■□□□□ 0.29
USF1-206ENST00000491629 SERPINA10Q9UK55 444 aa16.84■□□□□ 0.29
USF1-206ENST00000491629 CCL15-CCL14A0A0B4J2E2 113 aa16.83■□□□□ 0.28
USF1-206ENST00000491629 TCP10L2B9ZVM9 353 aa16.83■□□□□ 0.28
USF1-206ENST00000491629 CCL15Q16663 113 aa16.83■□□□□ 0.28
USF1-206ENST00000491629 KAZALD1Q96I82 304 aa16.83■□□□□ 0.28
USF1-206ENST00000491629 MGAMO43451 1857 aa16.82■□□□□ 0.28
USF1-206ENST00000491629 EXOSC9Q06265 439 aaKnown RBP16.82■□□□□ 0.28
USF1-206ENST00000491629 TAF1CQ15572 869 aaPredicted RBP16.82■□□□□ 0.28
USF1-206ENST00000491629 COLQQ9Y215 455 aaPredicted RBP16.82■□□□□ 0.28
USF1-206ENST00000491629 AK9Q5TCS8 1911 aa16.81■□□□□ 0.28
USF1-206ENST00000491629 CRKP46108 304 aa16.81■□□□□ 0.28
USF1-206ENST00000491629 MAP3K9P80192 1104 aa16.81■□□□□ 0.28
USF1-206ENST00000491629 TNFAIP1Q13829 316 aa16.81■□□□□ 0.28
USF1-206ENST00000491629 UBE4AQ14139 1066 aa16.81■□□□□ 0.28
USF1-206ENST00000491629 OTUD5Q96G74 571 aa16.81■□□□□ 0.28
USF1-206ENST00000491629 SPINK5Q9NQ38 1064 aaPredicted RBP16.81■□□□□ 0.28
USF1-206ENST00000491629 CNNM1Q9NRU3 951 aa16.81■□□□□ 0.28
USF1-206ENST00000491629 SNCAIPQ9Y6H5 919 aa16.81■□□□□ 0.28
USF1-206ENST00000491629 GRM8O00222 908 aa16.8■□□□□ 0.28
USF1-206ENST00000491629 HIBADHP31937 336 aaKnown RBP16.8■□□□□ 0.28
USF1-206ENST00000491629 GTF2A2P52657 109 aa16.8■□□□□ 0.28
USF1-206ENST00000491629 CACNB3P54284 484 aa16.8■□□□□ 0.28
USF1-206ENST00000491629 CCDC57Q2TAC2 916 aa16.8■□□□□ 0.28
USF1-206ENST00000491629 SLC9C1Q4G0N8 1177 aa16.8■□□□□ 0.28
USF1-206ENST00000491629 TMEM106CQ9BVX2 250 aa16.8■□□□□ 0.28
USF1-206ENST00000491629 ZFYVE28Q9HCC9 887 aa16.8■□□□□ 0.28
USF1-206ENST00000491629 IQSEC3Q9UPP2 1182 aaPredicted RBP16.8■□□□□ 0.28
USF1-206ENST00000491629 RIPOR2Q9Y4F9 1068 aa16.8■□□□□ 0.28
USF1-206ENST00000491629 MYCP01106 439 aaPredicted RBP16.79■□□□□ 0.28
USF1-206ENST00000491629 CTGFP29279 349 aa16.79■□□□□ 0.28
USF1-206ENST00000491629 FBXO33Q7Z6M2 555 aa16.79■□□□□ 0.28
USF1-206ENST00000491629 SH3TC2Q8TF17 1288 aa16.79■□□□□ 0.28
USF1-206ENST00000491629 SUCLG2Q96I99 432 aa16.79■□□□□ 0.28
USF1-206ENST00000491629 SPDYE5A6NIY4 337 aa16.78■□□□□ 0.28
USF1-206ENST00000491629 BTBD19C9JJ37 291 aa16.78■□□□□ 0.28
USF1-206ENST00000491629 NCBP3Q53F19 620 aaKnown RBP16.78■□□□□ 0.28
USF1-206ENST00000491629 TAF7LQ5H9L4 462 aa16.78■□□□□ 0.28
USF1-206ENST00000491629 DOCK3Q8IZD9 2030 aa16.77■□□□□ 0.28
USF1-206ENST00000491629 LAMA3Q16787 3333 aa16.77■□□□□ 0.28
USF1-206ENST00000491629 H0YGN5 161 aa16.77■□□□□ 0.28
USF1-206ENST00000491629 IRF6O14896 467 aa16.77■□□□□ 0.28
USF1-206ENST00000491629 TLR2O60603 784 aa16.77■□□□□ 0.28
USF1-206ENST00000491629 LACTBP83111 547 aaPredicted RBP16.77■□□□□ 0.28
USF1-206ENST00000491629 ZKSCAN4Q969J2 545 aaPredicted RBP16.77■□□□□ 0.28
USF1-206ENST00000491629 PTPRFP10586 1907 aa16.76■□□□□ 0.27
USF1-206ENST00000491629 SLC4A8Q2Y0W8 1093 aa16.76■□□□□ 0.27
USF1-206ENST00000491629 LRRC24Q50LG9 513 aa16.76■□□□□ 0.27
USF1-206ENST00000491629 NBPF11Q86T75 865 aa16.76■□□□□ 0.27
USF1-206ENST00000491629 VGLL2Q8N8G2 317 aa16.76■□□□□ 0.27
USF1-206ENST00000491629 SHISA4Q96DD7 197 aa16.76■□□□□ 0.27
USF1-206ENST00000491629 SALL2Q9Y467 1007 aaPredicted RBP16.76■□□□□ 0.27
USF1-206ENST00000491629 CSADQ9Y600 493 aa16.76■□□□□ 0.27
USF1-206ENST00000491629 NBPF7P0C2Y1 421 aaPredicted RBP16.75■□□□□ 0.27
USF1-206ENST00000491629 HDLBPQ00341 1268 aaKnown RBP16.75■□□□□ 0.27
USF1-206ENST00000491629 CHAF1AQ13111 956 aaPredicted RBP16.75■□□□□ 0.27
USF1-206ENST00000491629 MTFR1Q15390 333 aa16.75■□□□□ 0.27
USF1-206ENST00000491629 APOBEC3HQ6NTF7 200 aaKnown RBP16.75■□□□□ 0.27
USF1-206ENST00000491629 ERO1BQ86YB8 467 aa16.75■□□□□ 0.27
USF1-206ENST00000491629 COL6A3P12111 3177 aa16.75■□□□□ 0.27
USF1-206ENST00000491629 ALPK3Q96L96 1907 aa16.74■□□□□ 0.27
USF1-206ENST00000491629 ADGRA2Q96PE1 1338 aa16.74■□□□□ 0.27
USF1-206ENST00000491629 ALDH1L1O75891 902 aa16.74■□□□□ 0.27
USF1-206ENST00000491629 ECM2O94769 699 aaPredicted RBP16.74■□□□□ 0.27
USF1-206ENST00000491629 CETPP11597 493 aa16.74■□□□□ 0.27
USF1-206ENST00000491629 TNNI2P48788 182 aa16.74■□□□□ 0.27
USF1-206ENST00000491629 C17orf99Q6UX52 265 aa16.74■□□□□ 0.27
USF1-206ENST00000491629 WDR63Q8IWG1 891 aa16.74■□□□□ 0.27
USF1-206ENST00000491629 WRNIP1Q96S55 665 aa16.74■□□□□ 0.27
USF1-206ENST00000491629 C9orf78Q9NZ63 289 aaPredicted RBP16.74■□□□□ 0.27
USF1-206ENST00000491629 UTYO14607 1347 aa16.73■□□□□ 0.27
USF1-206ENST00000491629 PHIPQ8WWQ0 1821 aa16.73■□□□□ 0.27
USF1-206ENST00000491629 PPIL2Q13356 520 aa16.73■□□□□ 0.27
USF1-206ENST00000491629 MOGSQ13724 837 aa16.73■□□□□ 0.27
USF1-206ENST00000491629 ARHGEF6Q15052 776 aa16.73■□□□□ 0.27
USF1-206ENST00000491629 ANKRD44Q8N8A2 993 aa16.73■□□□□ 0.27
USF1-206ENST00000491629 ZDHHC15Q96MV8 337 aa16.73■□□□□ 0.27
USF1-206ENST00000491629 BICC1Q9H694 974 aaKnown RBP16.73■□□□□ 0.27
USF1-206ENST00000491629 ZCCHC17Q9NP64 241 aaKnown RBP16.73■□□□□ 0.27
USF1-206ENST00000491629 MROH5Q6ZUA9 1318 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 INPP5BP32019 993 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 BCAMP50895 628 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 SNAPC2Q13487 334 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 RABL6Q3YEC7 729 aaPredicted RBP16.72■□□□□ 0.27
USF1-206ENST00000491629 SLC4A10Q6U841 1118 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 FAM83AQ86UY5 434 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 TEKT1Q969V4 418 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 TRIM47Q96LD4 638 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 MRIQ9BWK5 157 aa16.72■□□□□ 0.27
USF1-206ENST00000491629 SRCIN1Q9C0H9 1055 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms