RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 FXR1P51114 621 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP39-216ENST00000490193 OTUD7BQ6GQQ9 843 aa10.49□□□□□ -0.73
USP39-216ENST00000490193 PRKRIP1Q9H875 184 aaPredicted RBP10.49□□□□□ -0.73
USP39-216ENST00000490193 ST18O60284 1047 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 GJA5P36382 358 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 KCNJ4P48050 445 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 IREB2P48200 963 aaKnown RBP10.48□□□□□ -0.73
USP39-216ENST00000490193 CRHR2Q13324 411 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 CFAP100Q494V2 611 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 G2E3Q7L622 706 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 ANKRD13AQ8IZ07 590 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 LINS1Q8NG48 757 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 CD99L2Q8TCZ2 262 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 PRMT6Q96LA8 375 aaPredicted RBP10.48□□□□□ -0.73
USP39-216ENST00000490193 MYH16Q9H6N6 1097 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 PCDHAC2Q9Y5I4 1007 aa10.48□□□□□ -0.73
USP39-216ENST00000490193 ANKRD18BA2A2Z9 1011 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 USP2O75604 605 aaPredicted RBP10.47□□□□□ -0.73
USP39-216ENST00000490193 SP3Q02447 781 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 FLIIQ13045 1269 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 CCDC27Q2M243 656 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 TWISTNBQ3B726 338 aaPredicted RBP10.47□□□□□ -0.73
USP39-216ENST00000490193 NBPF12Q5TAG4 269 aaPredicted RBP10.47□□□□□ -0.73
USP39-216ENST00000490193 ZNF804AQ7Z570 1209 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 SLAIN1Q8ND83 568 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 PTPN18Q99952 460 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 EFCC1Q9HA90 598 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 PCDHB13Q9Y5F0 798 aa10.47□□□□□ -0.73
USP39-216ENST00000490193 CLRN2A0PK11 232 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 SNAP23O00161 211 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 CAP1Q01518 475 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 RASA3Q14644 834 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 DNAAF4Q8WXU2 420 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 TSR2Q969E8 191 aaKnown RBP10.46□□□□□ -0.73
USP39-216ENST00000490193 MS4A4AQ96JQ5 239 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 AOX1Q06278 1338 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 IL16Q14005 1332 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 FAM205AQ6ZU69 1335 aa10.46□□□□□ -0.73
USP39-216ENST00000490193 TAF5LO75529 589 aa10.45□□□□□ -0.74
USP39-216ENST00000490193 EN2P19622 333 aaPredicted RBP10.45□□□□□ -0.74
USP39-216ENST00000490193 FOXO4P98177 505 aa10.45□□□□□ -0.74
USP39-216ENST00000490193 IFIT5Q13325 482 aaKnown RBP10.45□□□□□ -0.74
USP39-216ENST00000490193 TNFAIP1Q13829 316 aa10.45□□□□□ -0.74
USP39-216ENST00000490193 OPTNQ96CV9 577 aa10.45□□□□□ -0.74
USP39-216ENST00000490193 ZNF333Q96JL9 665 aa10.45□□□□□ -0.74
USP39-216ENST00000490193 VEZTQ9HBM0 779 aa10.45□□□□□ -0.74
USP39-216ENST00000490193 F8W031 263 aaPredicted RBP10.44□□□□□ -0.74
USP39-216ENST00000490193 FKBP5Q13451 457 aaPredicted RBP10.44□□□□□ -0.74
USP39-216ENST00000490193 ARHGEF6Q15052 776 aa10.44□□□□□ -0.74
USP39-216ENST00000490193 HELBQ8NG08 1087 aaPredicted RBP10.44□□□□□ -0.74
USP39-216ENST00000490193 TEPSINQ96N21 525 aa10.44□□□□□ -0.74
USP39-216ENST00000490193 ZBTB47Q9UFB7 747 aaPredicted RBP10.44□□□□□ -0.74
USP39-216ENST00000490193 SERPINA10Q9UK55 444 aa10.44□□□□□ -0.74
USP39-216ENST00000490193 SZT2Q5T011 3432 aa10.44□□□□□ -0.74
USP39-216ENST00000490193 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.43□□□□□ -0.74
USP39-216ENST00000490193 WWC1Q8IX03 1113 aa10.43□□□□□ -0.74
USP39-216ENST00000490193 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.43□□□□□ -0.743e-6■□□□□ 9.8
USP39-216ENST00000490193 TDRD7Q8NHU6 1098 aaKnown RBP10.43□□□□□ -0.74
USP39-216ENST00000490193 BRI3BPQ8WY22 251 aa10.43□□□□□ -0.74
USP39-216ENST00000490193 TMEM106CQ9BVX2 250 aa10.43□□□□□ -0.74
USP39-216ENST00000490193 ELP3Q9H9T3 547 aa10.43□□□□□ -0.74
USP39-216ENST00000490193 ZCCHC17Q9NP64 241 aaKnown RBP10.43□□□□□ -0.74
USP39-216ENST00000490193 ZNF70Q9UC06 446 aaPredicted RBP10.43□□□□□ -0.74
USP39-216ENST00000490193 ZSWIM8A7E2V4 1837 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 CEP290O15078 2479 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 GTF2A2P52657 109 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 RBM5P52756 815 aaKnown RBP eCLIP10.42□□□□□ -0.74
USP39-216ENST00000490193 NUBP1P53384 320 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 VGLL4Q14135 290 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 TAF1CQ15572 869 aaPredicted RBP10.42□□□□□ -0.74
USP39-216ENST00000490193 SLC9C1Q4G0N8 1177 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 MFSD14BQ5SR56 506 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 BEND3Q5T5X7 828 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 LDHAL6AQ6ZMR3 332 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 NBPF11Q86T75 865 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 ZFYVE28Q9HCC9 887 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.42□□□□□ -0.74
USP39-216ENST00000490193 PTCH2Q9Y6C5 1203 aa10.42□□□□□ -0.74
USP39-216ENST00000490193 CCL15-CCL14A0A0B4J2E2 113 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 SPDYE5A6NIY4 337 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 TNNI2P48788 182 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 UBE4AQ14139 1066 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 CCL15Q16663 113 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 CCDC57Q2TAC2 916 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 LMBR1LQ6UX01 489 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 DZIP1LQ8IYY4 767 aaKnown RBP10.41□□□□□ -0.74
USP39-216ENST00000490193 FAM43AQ8N2R8 423 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 TMEM121BQ9BXQ6 578 aaPredicted RBP10.41□□□□□ -0.74
USP39-216ENST00000490193 TDRD3Q9H7E2 651 aaKnown RBP10.41□□□□□ -0.74
USP39-216ENST00000490193 TTF2Q9UNY4 1162 aaKnown RBP10.41□□□□□ -0.74
USP39-216ENST00000490193 JAG2Q9Y219 1238 aa10.41□□□□□ -0.74
USP39-216ENST00000490193 FANCIQ9NVI1 1328 aa10.4□□□□□ -0.74
USP39-216ENST00000490193 GRM8O00222 908 aa10.4□□□□□ -0.74
USP39-216ENST00000490193 VAMP4O75379 141 aa10.4□□□□□ -0.74
USP39-216ENST00000490193 GNRH1P01148 92 aa10.4□□□□□ -0.74
USP39-216ENST00000490193 PLCG2P16885 1265 aa10.4□□□□□ -0.74
USP39-216ENST00000490193 CRKP46108 304 aa10.4□□□□□ -0.74
USP39-216ENST00000490193 PRMT2P55345 433 aa10.4□□□□□ -0.74
USP39-216ENST00000490193 MAP3K9P80192 1104 aa10.4□□□□□ -0.74
USP39-216ENST00000490193 HDLBPQ00341 1268 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms