RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ALKBH8Q96BT7 664 aaKnown RBP6.21□□□□□ -1.42
CPSF3-205ENST00000489629 ZNF576Q9H609 170 aa6.21□□□□□ -1.42
CPSF3-205ENST00000489629 PCMTD2Q9NV79 361 aa6.21□□□□□ -1.42
CPSF3-205ENST00000489629 TIMELESSQ9UNS1 1208 aa6.21□□□□□ -1.42
CPSF3-205ENST00000489629 SOWAHDA6NJG2 315 aa6.2□□□□□ -1.42
CPSF3-205ENST00000489629 GAS2O43903 313 aaKnown RBP6.2□□□□□ -1.42
CPSF3-205ENST00000489629 DRD2P14416 443 aa6.2□□□□□ -1.42
CPSF3-205ENST00000489629 CDPF1Q6NVV7 123 aa6.2□□□□□ -1.42
CPSF3-205ENST00000489629 C2CD4AQ8NCU7 369 aaPredicted RBP6.2□□□□□ -1.42
CPSF3-205ENST00000489629 SHKBP1Q8TBC3 707 aa6.2□□□□□ -1.42
CPSF3-205ENST00000489629 TRIM56Q9BRZ2 755 aaKnown RBP6.2□□□□□ -1.42
CPSF3-205ENST00000489629 EHD4Q9H223 541 aa6.2□□□□□ -1.42
CPSF3-205ENST00000489629 ABCB6Q9NP58 842 aa6.2□□□□□ -1.42
CPSF3-205ENST00000489629 GNEQ9Y223 722 aaKnown RBP6.2□□□□□ -1.42
CPSF3-205ENST00000489629 SPINK2P20155 84 aa6.19□□□□□ -1.42
CPSF3-205ENST00000489629 MAOBP27338 520 aa6.19□□□□□ -1.42
CPSF3-205ENST00000489629 PTPN12Q05209 780 aaKnown RBP6.19□□□□□ -1.42
CPSF3-205ENST00000489629 SOX4Q06945 474 aaPredicted RBP6.19□□□□□ -1.42
CPSF3-205ENST00000489629 POU4F3Q15319 338 aa6.19□□□□□ -1.42
CPSF3-205ENST00000489629 PRPF40BQ6NWY9 871 aaKnown RBP6.19□□□□□ -1.42
CPSF3-205ENST00000489629 GLIS3Q8NEA6 775 aa6.19□□□□□ -1.42
CPSF3-205ENST00000489629 DMRTB1Q96MA1 342 aa6.19□□□□□ -1.42
CPSF3-205ENST00000489629 CSRNP1Q96S65 589 aa6.19□□□□□ -1.42
CPSF3-205ENST00000489629 ECEL1O95672 775 aa6.18□□□□□ -1.42
CPSF3-205ENST00000489629 CYP11A1P05108 521 aa6.18□□□□□ -1.42
CPSF3-205ENST00000489629 INTS5Q6P9B9 1019 aaKnown RBP6.18□□□□□ -1.42
CPSF3-205ENST00000489629 EZH1Q92800 747 aaPredicted RBP6.18□□□□□ -1.42
CPSF3-205ENST00000489629 MFSD14AQ96MC6 490 aa6.18□□□□□ -1.42
CPSF3-205ENST00000489629 TMEM238LA0A1B0GVL6 79 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 ADAMTS4O75173 837 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 BRD1O95696 1058 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 F13BP05160 661 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 ADH5P11766 374 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 GRM2Q14416 872 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 TMC7Q7Z402 723 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 DTX1Q86Y01 620 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 SHISA5Q8N114 240 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 TMC1Q8TDI8 760 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 FBLIM1Q8WUP2 373 aa6.17□□□□□ -1.42
CPSF3-205ENST00000489629 FAM95CA0A1B0GW59 222 aa6.16□□□□□ -1.42
CPSF3-205ENST00000489629 WDR64B1ANS9 1081 aa6.16□□□□□ -1.42
CPSF3-205ENST00000489629 RXRBP28702 533 aa6.16□□□□□ -1.42
CPSF3-205ENST00000489629 GRIK1P39086 918 aa6.16□□□□□ -1.42
CPSF3-205ENST00000489629 FAAP100Q0VG06 881 aa6.16□□□□□ -1.42
CPSF3-205ENST00000489629 RPS26P11Q5JNZ5 115 aaPredicted RBP6.16□□□□□ -1.42
CPSF3-205ENST00000489629 EPS8L3Q8TE67 593 aaKnown RBP6.16□□□□□ -1.42
CPSF3-205ENST00000489629 KRTAP9-2Q9BYQ4 174 aa6.16□□□□□ -1.42
CPSF3-205ENST00000489629 GSX1Q9H4S2 264 aaPredicted RBP6.16□□□□□ -1.42
CPSF3-205ENST00000489629 GADD45BO75293 160 aaPredicted RBP6.15□□□□□ -1.42
CPSF3-205ENST00000489629 HOXA10P31260 410 aaPredicted RBP6.15□□□□□ -1.42
CPSF3-205ENST00000489629 USP11P51784 963 aa6.15□□□□□ -1.42
CPSF3-205ENST00000489629 DSC3Q14574 896 aa6.15□□□□□ -1.42
CPSF3-205ENST00000489629 NFKBIBQ15653 356 aa6.15□□□□□ -1.42
CPSF3-205ENST00000489629 DDX54Q8TDD1 881 aaKnown RBP6.15□□□□□ -1.42
CPSF3-205ENST00000489629 GATA6Q92908 595 aa6.15□□□□□ -1.42
CPSF3-205ENST00000489629 ZFYVE1Q9HBF4 777 aa6.15□□□□□ -1.42
CPSF3-205ENST00000489629 DCTN4Q9UJW0 460 aa6.15□□□□□ -1.42
CPSF3-205ENST00000489629 ACTL7BQ9Y614 415 aa6.15□□□□□ -1.42
CPSF3-205ENST00000489629 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.14□□□□□ -1.43
CPSF3-205ENST00000489629 ADMP35318 185 aa6.14□□□□□ -1.43
CPSF3-205ENST00000489629 HP1BP3Q5SSJ5 553 aaPredicted RBP6.14□□□□□ -1.43
CPSF3-205ENST00000489629 PAOXQ6QHF9 649 aa6.14□□□□□ -1.43
CPSF3-205ENST00000489629 CORO1BQ9BR76 489 aa6.14□□□□□ -1.43
CPSF3-205ENST00000489629 ACSS3Q9H6R3 686 aa6.14□□□□□ -1.43
CPSF3-205ENST00000489629 PIM2Q9P1W9 311 aa6.14□□□□□ -1.43
CPSF3-205ENST00000489629 PRKAG2Q9UGJ0 569 aa6.14□□□□□ -1.43
CPSF3-205ENST00000489629 TRAK1Q9UPV9 953 aa6.14□□□□□ -1.43
CPSF3-205ENST00000489629 SYNGAP1Q96PV0 1343 aa6.14□□□□□ -1.43
CPSF3-205ENST00000489629 AOC2O75106 756 aa6.13□□□□□ -1.43
CPSF3-205ENST00000489629 GP2P55259 537 aaKnown RBP6.13□□□□□ -1.43
CPSF3-205ENST00000489629 AP3B2Q13367 1082 aa6.13□□□□□ -1.43
CPSF3-205ENST00000489629 AKAP4Q5JQC9 854 aa6.13□□□□□ -1.43
CPSF3-205ENST00000489629 PI16Q6UXB8 463 aa6.13□□□□□ -1.43
CPSF3-205ENST00000489629 WDR18Q9BV38 432 aa6.13□□□□□ -1.43
CPSF3-205ENST00000489629 OAS3Q9Y6K5 1087 aaKnown RBP6.13□□□□□ -1.43
CPSF3-205ENST00000489629 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.12□□□□□ -1.43
CPSF3-205ENST00000489629 KRTAP9-6A0A140TA67 174 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 CPSF6Q16630 551 aaKnown RBP eCLIP6.12□□□□□ -1.43
CPSF3-205ENST00000489629 SEZ6L2Q6UXD5 910 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 ZAR1Q86SH2 424 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 FBXL6Q8N531 539 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 YIPF2Q9BWQ6 316 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 SEMA6CQ9H3T2 930 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 RAD18Q9NS91 495 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 ATG3Q9NT62 314 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 FAM105AQ9NUU6 356 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 BIN2Q9UBW5 565 aaPredicted RBP6.12□□□□□ -1.43
CPSF3-205ENST00000489629 PPP1R9AQ9ULJ8 1098 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 LEMD3Q9Y2U8 911 aa6.12□□□□□ -1.43
CPSF3-205ENST00000489629 COL17A1Q9UMD9 1497 aaPredicted RBP6.11□□□□□ -1.43
CPSF3-205ENST00000489629 TREHO43280 583 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 ZNF862O60290 1169 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 NFICP08651 508 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 FOSL1P15407 271 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 ZNF157P51786 506 aaPredicted RBP6.11□□□□□ -1.43
CPSF3-205ENST00000489629 ENOX2Q16206 610 aaKnown RBP6.11□□□□□ -1.43
CPSF3-205ENST00000489629 MSMPQ1L6U9 139 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 MCTP1Q6DN14 999 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 DYMQ7RTS9 669 aa6.11□□□□□ -1.43
CPSF3-205ENST00000489629 GIMAP7Q8NHV1 300 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms