RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 RTKN2Q8IZC4 609 aa25.89■■□□□ 1.73
SMC4-221ENST00000489573 DAXXQ9UER7 740 aaPredicted RBP25.89■■□□□ 1.73
SMC4-221ENST00000489573 FAM205AQ6ZU69 1335 aa25.89■■□□□ 1.73
SMC4-221ENST00000489573 G3V3G9 751 aa25.88■■□□□ 1.73
SMC4-221ENST00000489573 LDHBP07195 334 aaKnown RBP25.88■■□□□ 1.73
SMC4-221ENST00000489573 MECOMQ03112 1051 aa25.88■■□□□ 1.73
SMC4-221ENST00000489573 DCAF8Q5TAQ9 597 aa25.88■■□□□ 1.73
SMC4-221ENST00000489573 KLHL34Q8N239 644 aa25.88■■□□□ 1.73
SMC4-221ENST00000489573 TBC1D22AQ8WUA7 517 aa25.88■■□□□ 1.73
SMC4-221ENST00000489573 STRBPQ96SI9 672 aaKnown RBP25.88■■□□□ 1.73
SMC4-221ENST00000489573 TBC1D2Q9BYX2 928 aa25.88■■□□□ 1.73
SMC4-221ENST00000489573 FOXP2O15409 715 aa25.87■■□□□ 1.73
SMC4-221ENST00000489573 DOK7Q18PE1 504 aa25.87■■□□□ 1.73
SMC4-221ENST00000489573 SOGA3Q5TF21 947 aa25.87■■□□□ 1.73
SMC4-221ENST00000489573 DZIP1Q86YF9 867 aaKnown RBP25.87■■□□□ 1.73
SMC4-221ENST00000489573 HSCBQ8IWL3 235 aa25.87■■□□□ 1.73
SMC4-221ENST00000489573 ADGRA1Q86SQ6 560 aa25.86■■□□□ 1.73
SMC4-221ENST00000489573 ZNF384Q8TF68 577 aa25.86■■□□□ 1.73
SMC4-221ENST00000489573 ST18O60284 1047 aa25.86■■□□□ 1.73
SMC4-221ENST00000489573 DALRD3Q5D0E6 543 aaKnown RBP25.86■■□□□ 1.73
SMC4-221ENST00000489573 MIGA1Q8NAN2 632 aa25.86■■□□□ 1.73
SMC4-221ENST00000489573 ARMT1Q9H993 441 aa25.86■■□□□ 1.73
SMC4-221ENST00000489573 CTNNA3Q9UI47 895 aa25.86■■□□□ 1.73
SMC4-221ENST00000489573 MAGEB6P1A0A0J9YX57 407 aa25.85■■□□□ 1.73
SMC4-221ENST00000489573 GTF2IP78347 998 aa25.85■■□□□ 1.73
SMC4-221ENST00000489573 KIAA2012Q0VF49 1180 aa25.85■■□□□ 1.73
SMC4-221ENST00000489573 TSGA10IPQ3SY00 556 aa25.85■■□□□ 1.73
SMC4-221ENST00000489573 PODNQ7Z5L7 613 aa25.85■■□□□ 1.73
SMC4-221ENST00000489573 IL27Q8NEV9 243 aa25.85■■□□□ 1.73
SMC4-221ENST00000489573 PSMD1Q99460 953 aa25.85■■□□□ 1.73
SMC4-221ENST00000489573 SPON1Q9HCB6 807 aa25.85■■□□□ 1.73
SMC4-221ENST00000489573 CCDC88AQ3V6T2 1871 aa25.84■■□□□ 1.73
SMC4-221ENST00000489573 GNAT2P19087 354 aa25.84■■□□□ 1.73
SMC4-221ENST00000489573 MFSD14BQ5SR56 506 aa25.84■■□□□ 1.73
SMC4-221ENST00000489573 LCORLQ8N3X6 602 aa25.84■■□□□ 1.73
SMC4-221ENST00000489573 BRCA1P38398 1863 aaKnown RBP25.84■■□□□ 1.73
SMC4-221ENST00000489573 CYP21A2P08686 494 aa25.83■■□□□ 1.73
SMC4-221ENST00000489573 NEK4P51957 841 aa25.83■■□□□ 1.73
SMC4-221ENST00000489573 GSTO1P78417 241 aa25.83■■□□□ 1.73
SMC4-221ENST00000489573 JAKMIP1Q96N16 626 aaKnown RBP25.83■■□□□ 1.73
SMC4-221ENST00000489573 TM6SF1Q9BZW5 370 aa25.83■■□□□ 1.73
SMC4-221ENST00000489573 DBNDD1Q9H9R9 158 aa25.83■■□□□ 1.73
SMC4-221ENST00000489573 CD2BP2O95400 341 aaKnown RBP25.82■■□□□ 1.72
SMC4-221ENST00000489573 SLC4A3P48751 1232 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 KRT32Q14532 448 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 GRIK5Q16478 980 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 AOC3Q16853 763 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 RIOK1Q9BRS2 568 aaKnown RBP25.82■■□□□ 1.72
SMC4-221ENST00000489573 RPAP1Q9BWH6 1393 aaPredicted RBP25.82■■□□□ 1.72
SMC4-221ENST00000489573 CHD4Q14839 1912 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 ECE2O60344 883 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 FGAP02671 866 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 APPP05067 770 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 ADCK5Q3MIX3 580 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 FBXW7Q969H0 707 aa25.82■■□□□ 1.72
SMC4-221ENST00000489573 UPF3BQ9BZI7 483 aaKnown RBP25.82■■□□□ 1.72
SMC4-221ENST00000489573 PATL2C9JE40 543 aaKnown RBP25.81■■□□□ 1.72
SMC4-221ENST00000489573 PPIP5K2O43314 1243 aa25.81■■□□□ 1.72
SMC4-221ENST00000489573 PSMA5P28066 241 aa25.81■■□□□ 1.72
SMC4-221ENST00000489573 TTLL5Q6EMB2 1281 aa25.81■■□□□ 1.72
SMC4-221ENST00000489573 SUGT1Q9Y2Z0 365 aa25.81■■□□□ 1.72
SMC4-221ENST00000489573 TAF6LQ9Y6J9 622 aa25.81■■□□□ 1.72
SMC4-221ENST00000489573 SLC4A4Q9Y6R1 1079 aa25.81■■□□□ 1.72
SMC4-221ENST00000489573 ZMYM6O95789 1325 aa25.81■■□□□ 1.72
SMC4-221ENST00000489573 CASTP20810 708 aaKnown RBP25.8■■□□□ 1.72
SMC4-221ENST00000489573 ALX1Q15699 326 aa25.8■■□□□ 1.72
SMC4-221ENST00000489573 LDHCP07864 332 aa25.79■■□□□ 1.72
SMC4-221ENST00000489573 IMMTQ16891 758 aaKnown RBP25.79■■□□□ 1.72
SMC4-221ENST00000489573 ZSWIM6Q9HCJ5 1215 aa25.79■■□□□ 1.72
SMC4-221ENST00000489573 K7ELQ4 463 aaPredicted RBP25.78■■□□□ 1.72
SMC4-221ENST00000489573 DYNLL1P63167 89 aaKnown RBP25.78■■□□□ 1.72
SMC4-221ENST00000489573 NACAP1Q9BZK3 213 aa25.78■■□□□ 1.72
SMC4-221ENST00000489573 VPS33BQ9H267 617 aa25.78■■□□□ 1.72
SMC4-221ENST00000489573 EPB41L4AQ9HCS5 686 aaPredicted RBP25.78■■□□□ 1.72
SMC4-221ENST00000489573 GSG1L2A8MUP6 293 aa25.78■■□□□ 1.72
SMC4-221ENST00000489573 PRKAB2O43741 272 aa25.78■■□□□ 1.72
SMC4-221ENST00000489573 IFNL3Q8IZI9 196 aa25.78■■□□□ 1.72
SMC4-221ENST00000489573 AATFQ9NY61 560 aaKnown RBP eCLIP25.78■■□□□ 1.724e-8■■■■■ 116
SMC4-221ENST00000489573 CYP46A1Q9Y6A2 500 aa25.78■■□□□ 1.72
SMC4-221ENST00000489573 MROH7-TTC4A0A0A0MT08 1334 aa25.77■■□□□ 1.72
SMC4-221ENST00000489573 DIXDC1Q155Q3 683 aa25.77■■□□□ 1.72
SMC4-221ENST00000489573 SLF2Q8IX21 1173 aa25.77■■□□□ 1.72
SMC4-221ENST00000489573 NAPBQ9H115 298 aa25.77■■□□□ 1.72
SMC4-221ENST00000489573 MCM2P49736 904 aa25.76■■□□□ 1.71
SMC4-221ENST00000489573 STRIP1Q5VSL9 837 aa25.76■■□□□ 1.71
SMC4-221ENST00000489573 BLOC1S2Q6QNY1 142 aa25.76■■□□□ 1.71
SMC4-221ENST00000489573 RUFY3Q7L099 469 aa25.76■■□□□ 1.71
SMC4-221ENST00000489573 CERS5Q8N5B7 392 aa25.76■■□□□ 1.71
SMC4-221ENST00000489573 ZNF213O14771 459 aa25.75■■□□□ 1.71
SMC4-221ENST00000489573 FKBP1AP62942 108 aaKnown RBP25.75■■□□□ 1.71
SMC4-221ENST00000489573 NLGN2Q8NFZ4 835 aa25.75■■□□□ 1.71
SMC4-221ENST00000489573 TTC14Q96N46 770 aa25.75■■□□□ 1.71
SMC4-221ENST00000489573 NEK1Q96PY6 1258 aa25.75■■□□□ 1.71
SMC4-221ENST00000489573 NOL10Q9BSC4 688 aaKnown RBP25.75■■□□□ 1.71
SMC4-221ENST00000489573 ZNF277Q9NRM2 450 aaPredicted RBP25.75■■□□□ 1.71
SMC4-221ENST00000489573 BCS1LQ9Y276 419 aa25.75■■□□□ 1.71
SMC4-221ENST00000489573 CPA1P15085 419 aa25.74■■□□□ 1.71
SMC4-221ENST00000489573 TDO2P48775 406 aa25.74■■□□□ 1.71
SMC4-221ENST00000489573 HAND2P61296 217 aa25.74■■□□□ 1.71
SMC4-221ENST00000489573 STOX1Q6ZVD7 989 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms