RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 METTL24Q5JXM2 366 aa15.61■□□□□ 0.09
CPSF3-204ENST00000489403 FBXO33Q7Z6M2 555 aa15.61■□□□□ 0.09
CPSF3-204ENST00000489403 VGLL2Q8N8G2 317 aa15.61■□□□□ 0.09
CPSF3-204ENST00000489403 TEPSINQ96N21 525 aa15.61■□□□□ 0.09
CPSF3-204ENST00000489403 PTPRCP08575 1304 aa15.61■□□□□ 0.09
CPSF3-204ENST00000489403 HTTP42858 3142 aa15.61■□□□□ 0.09
CPSF3-204ENST00000489403 CHAF1AQ13111 956 aaPredicted RBP15.6■□□□□ 0.09
CPSF3-204ENST00000489403 VPS37DQ86XT2 251 aa15.6■□□□□ 0.09
CPSF3-204ENST00000489403 KLHDC4Q8TBB5 520 aa15.6■□□□□ 0.09
CPSF3-204ENST00000489403 TCP10L2B9ZVM9 353 aa15.59■□□□□ 0.09
CPSF3-204ENST00000489403 PDE8BO95263 885 aa15.59■□□□□ 0.09
CPSF3-204ENST00000489403 CAVIN4Q5BKX8 364 aa15.59■□□□□ 0.09
CPSF3-204ENST00000489403 SSH1Q8WYL5 1049 aa15.59■□□□□ 0.09
CPSF3-204ENST00000489403 OPTNQ96CV9 577 aa15.59■□□□□ 0.09
CPSF3-204ENST00000489403 TMEM39BQ9GZU3 492 aa15.59■□□□□ 0.09
CPSF3-204ENST00000489403 ELP3Q9H9T3 547 aa15.59■□□□□ 0.09
CPSF3-204ENST00000489403 TESPA1A2RU30 521 aaPredicted RBP15.58■□□□□ 0.08
CPSF3-204ENST00000489403 E9PSI1 815 aa15.58■□□□□ 0.08
CPSF3-204ENST00000489403 CRHR2Q13324 411 aa15.58■□□□□ 0.08
CPSF3-204ENST00000489403 OTOP1Q7RTM1 612 aa15.58■□□□□ 0.08
CPSF3-204ENST00000489403 TBC1D22AQ8WUA7 517 aa15.58■□□□□ 0.08
CPSF3-204ENST00000489403 PTPN18Q99952 460 aa15.58■□□□□ 0.08
CPSF3-204ENST00000489403 USP44Q9H0E7 712 aa15.58■□□□□ 0.08
CPSF3-204ENST00000489403 TRIM17Q9Y577 477 aa15.58■□□□□ 0.08
CPSF3-204ENST00000489403 MYH13Q9UKX3 1938 aa15.58■□□□□ 0.08
CPSF3-204ENST00000489403 FRAT2O75474 233 aaPredicted RBP15.57■□□□□ 0.08
CPSF3-204ENST00000489403 TNNI2P48788 182 aa15.57■□□□□ 0.08
CPSF3-204ENST00000489403 BCAMP50895 628 aa15.57■□□□□ 0.08
CPSF3-204ENST00000489403 HDLBPQ00341 1268 aaKnown RBP15.57■□□□□ 0.08
CPSF3-204ENST00000489403 OTUD7BQ6GQQ9 843 aa15.57■□□□□ 0.08
CPSF3-204ENST00000489403 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.57■□□□□ 0.08
CPSF3-204ENST00000489403 CENPFP49454 3210 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 FGFR2P21802 821 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 CACNB3P54284 484 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 SLFN5Q08AF3 891 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 VGLL4Q14135 290 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.56■□□□□ 0.08
CPSF3-204ENST00000489403 CD99L2Q8TCZ2 262 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 CNKSR2Q8WXI2 1034 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 TEKT1Q969V4 418 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 MS4A4AQ96JQ5 239 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 KIF16BQ96L93 1317 aa15.56■□□□□ 0.08
CPSF3-204ENST00000489403 PDE4DIPQ5VU43 2346 aa15.55■□□□□ 0.08
CPSF3-204ENST00000489403 RFX5P48382 616 aaPredicted RBP15.55■□□□□ 0.08
CPSF3-204ENST00000489403 PUM3Q15397 648 aaKnown RBP15.55■□□□□ 0.08
CPSF3-204ENST00000489403 ERO1AQ96HE7 468 aa15.55■□□□□ 0.08
CPSF3-204ENST00000489403 ZDHHC15Q96MV8 337 aa15.55■□□□□ 0.08
CPSF3-204ENST00000489403 IFIT1P09914 478 aaKnown RBP15.54■□□□□ 0.08
CPSF3-204ENST00000489403 MAP3K9P80192 1104 aa15.54■□□□□ 0.08
CPSF3-204ENST00000489403 CAP1Q01518 475 aa15.54■□□□□ 0.08
CPSF3-204ENST00000489403 ALDH1L2Q3SY69 923 aa15.54■□□□□ 0.08
CPSF3-204ENST00000489403 PRPF38BQ5VTL8 546 aaKnown RBP15.54■□□□□ 0.08
CPSF3-204ENST00000489403 BRI3BPQ8WY22 251 aa15.54■□□□□ 0.08
CPSF3-204ENST00000489403 MRIQ9BWK5 157 aa15.54■□□□□ 0.08
CPSF3-204ENST00000489403 MAST3O60307 1309 aa15.53■□□□□ 0.08
CPSF3-204ENST00000489403 EYA2O00167 538 aa15.53■□□□□ 0.08
CPSF3-204ENST00000489403 SP3Q02447 781 aa15.53■□□□□ 0.08
CPSF3-204ENST00000489403 APOBEC3HQ6NTF7 200 aaKnown RBP15.53■□□□□ 0.08
CPSF3-204ENST00000489403 OTUD5Q96G74 571 aa15.53■□□□□ 0.08
CPSF3-204ENST00000489403 PTPN22Q9Y2R2 807 aa15.53■□□□□ 0.08
CPSF3-204ENST00000489403 SUGT1Q9Y2Z0 365 aa15.53■□□□□ 0.08
CPSF3-204ENST00000489403 CSADQ9Y600 493 aa15.53■□□□□ 0.08
CPSF3-204ENST00000489403 RBBP6Q7Z6E9 1792 aaKnown RBP15.53■□□□□ 0.08
CPSF3-204ENST00000489403 MKI67P46013 3256 aaKnown RBP15.53■□□□□ 0.08
CPSF3-204ENST00000489403 BRCA2P51587 3418 aa15.53■□□□□ 0.08
CPSF3-204ENST00000489403 CCL15-CCL14A0A0B4J2E2 113 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 SLC5A1P13866 664 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 GTF2A2P52657 109 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 CCL15Q16663 113 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 FAM83AQ86UY5 434 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 CDCA7LQ96GN5 454 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 EFCC1Q9HA90 598 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 SMC4Q9NTJ3 1288 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 TMOD2Q9NZR1 351 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 SNCAIPQ9Y6H5 919 aa15.52■□□□□ 0.08
CPSF3-204ENST00000489403 RPAP1Q9BWH6 1393 aaPredicted RBP15.51■□□□□ 0.07
CPSF3-204ENST00000489403 POTEFA5A3E0 1075 aa15.51■□□□□ 0.07
CPSF3-204ENST00000489403 SPDYE5A6NIY4 337 aa15.51■□□□□ 0.07
CPSF3-204ENST00000489403 TAF1CQ15572 869 aaPredicted RBP15.51■□□□□ 0.07
CPSF3-204ENST00000489403 FKBP1CQ5VVH2 108 aa15.51■□□□□ 0.07
CPSF3-204ENST00000489403 HHIPL2Q6UWX4 724 aa15.51■□□□□ 0.07
CPSF3-204ENST00000489403 ATG9AQ7Z3C6 839 aa15.51■□□□□ 0.07
CPSF3-204ENST00000489403 FAM43AQ8N2R8 423 aa15.51■□□□□ 0.07
CPSF3-204ENST00000489403 LPIN2Q92539 896 aa15.51■□□□□ 0.07
CPSF3-204ENST00000489403 WRNIP1Q96S55 665 aa15.51■□□□□ 0.07
CPSF3-204ENST00000489403 INTS3Q68E01 1043 aaKnown RBP15.5■□□□□ 0.07
CPSF3-204ENST00000489403 ZKSCAN4Q969J2 545 aaPredicted RBP15.5■□□□□ 0.07
CPSF3-204ENST00000489403 ZFYVE28Q9HCC9 887 aa15.5■□□□□ 0.07
CPSF3-204ENST00000489403 UBTFL1P0CB47 393 aaPredicted RBP15.49■□□□□ 0.07
CPSF3-204ENST00000489403 ERO1BQ86YB8 467 aa15.49■□□□□ 0.07
CPSF3-204ENST00000489403 TRMT2AQ8IZ69 625 aaKnown RBP15.49■□□□□ 0.07
CPSF3-204ENST00000489403 WDR66Q8TBY9 1149 aa15.49■□□□□ 0.07
CPSF3-204ENST00000489403 ARMC5Q96C12 935 aa15.49■□□□□ 0.07
CPSF3-204ENST00000489403 SIL1Q9H173 461 aa15.49■□□□□ 0.07
CPSF3-204ENST00000489403 ZSWIM8A7E2V4 1837 aa15.49■□□□□ 0.07
CPSF3-204ENST00000489403 IRF6O14896 467 aa15.48■□□□□ 0.07
CPSF3-204ENST00000489403 PRDX5P30044 214 aa15.48■□□□□ 0.07
CPSF3-204ENST00000489403 DCAF15Q66K64 600 aa15.48■□□□□ 0.07
CPSF3-204ENST00000489403 POTEDQ86YR6 584 aa15.48■□□□□ 0.07
CPSF3-204ENST00000489403 HOOK2Q96ED9 719 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms