RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	BABAM1	Q9NWV8	329 aa		11.19	□□□□□ -0.62
USP4-213	ENST00000488520	RNF186	Q9NXI6	227 aa		11.19	□□□□□ -0.62
USP4-213	ENST00000488520	ECM29	Q5VYK3	1845 aa		11.19	□□□□□ -0.62
USP4-213	ENST00000488520	RNF40	O75150	1001 aa		11.18	□□□□□ -0.62
USP4-213	ENST00000488520	KIF4B	Q2VIQ3	1234 aa		11.18	□□□□□ -0.62
USP4-213	ENST00000488520	CCDC102A	Q96A19	550 aa		11.18	□□□□□ -0.62
USP4-213	ENST00000488520	GGA3	Q9NZ52	723 aa		11.18	□□□□□ -0.62
USP4-213	ENST00000488520	PAPPA2	Q9BXP8	1791 aa		11.18	□□□□□ -0.62
USP4-213	ENST00000488520	OAT	P04181	439 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	FECH	P22830	423 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	RPS12	P25398	132 aa	Known RBP	11.17	□□□□□ -0.62
USP4-213	ENST00000488520	SF3B3	Q15393	1217 aa	Known RBP	11.17	□□□□□ -0.62
USP4-213	ENST00000488520	SULF1	Q8IWU6	871 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	SLF2	Q8IX21	1173 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	PLBD2	Q8NHP8	589 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	TBC1D16	Q8TBP0	767 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	YTHDC1	Q96MU7	727 aa	Known RBP	11.17	□□□□□ -0.62
USP4-213	ENST00000488520	CSRNP1	Q96S65	589 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	EYA3	Q99504	573 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	ISCA1	Q9BUE6	129 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	CHMP4A	Q9BY43	222 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	MYH16	Q9H6N6	1097 aa		11.17	□□□□□ -0.62
USP4-213	ENST00000488520	SCAF8	Q9UPN6	1271 aa	Known RBP	11.17	□□□□□ -0.62
USP4-213	ENST00000488520	RCCD1	A6NED2	376 aa		11.16	□□□□□ -0.62
USP4-213	ENST00000488520	IRS4	O14654	1257 aa	Predicted RBP	11.16	□□□□□ -0.62
USP4-213	ENST00000488520	SLC10A3	P09131	477 aa		11.16	□□□□□ -0.62
USP4-213	ENST00000488520	SLC4A3	P48751	1232 aa		11.16	□□□□□ -0.62
USP4-213	ENST00000488520	RPS8	P62241	208 aa	Known RBP	11.16	□□□□□ -0.62
USP4-213	ENST00000488520	HDGFL1	Q5TGJ6	251 aa		11.16	□□□□□ -0.62
USP4-213	ENST00000488520	CDCA5	Q96FF9	252 aa		11.16	□□□□□ -0.62
USP4-213	ENST00000488520	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.16	□□□□□ -0.62
USP4-213	ENST00000488520	SEC31B	Q9NQW1	1179 aa		11.16	□□□□□ -0.62
USP4-213	ENST00000488520	IFT57	Q9NWB7	429 aa		11.16	□□□□□ -0.62
USP4-213	ENST00000488520	SAGE1	Q9NXZ1	904 aa		11.16	□□□□□ -0.62
USP4-213	ENST00000488520	UFL1	O94874	794 aa		11.15	□□□□□ -0.62
USP4-213	ENST00000488520	VIL1	P09327	827 aa	Known RBP	11.15	□□□□□ -0.62
USP4-213	ENST00000488520	ANGEL2	Q5VTE6	544 aa	Known RBP	11.15	□□□□□ -0.62
USP4-213	ENST00000488520	PXYLP1	Q8TE99	480 aa		11.15	□□□□□ -0.62
USP4-213	ENST00000488520	JARID2	Q92833	1246 aa	Predicted RBP	11.15	□□□□□ -0.62
USP4-213	ENST00000488520	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.15	□□□□□ -0.62
USP4-213	ENST00000488520	TMEM134	Q9H6X4	195 aa		11.15	□□□□□ -0.62
USP4-213	ENST00000488520	ANKIB1	Q9P2G1	1089 aa		11.15	□□□□□ -0.62
USP4-213	ENST00000488520	IL16	Q14005	1332 aa		11.14	□□□□□ -0.63
USP4-213	ENST00000488520		E9PSI1	815 aa		11.14	□□□□□ -0.63
USP4-213	ENST00000488520	CHL1	O00533	1208 aa		11.14	□□□□□ -0.63
USP4-213	ENST00000488520	SCARF1	Q14162	830 aa		11.14	□□□□□ -0.63
USP4-213	ENST00000488520	MOB2	Q70IA6	237 aa		11.14	□□□□□ -0.63
USP4-213	ENST00000488520	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
USP4-213	ENST00000488520	CTU1	Q7Z7A3	348 aa	Known RBP	11.14	□□□□□ -0.63
USP4-213	ENST00000488520	RASAL3	Q86YV0	1011 aa		11.14	□□□□□ -0.63
USP4-213	ENST00000488520	DBF4	Q9UBU7	674 aa	Predicted RBP	11.14	□□□□□ -0.63
USP4-213	ENST00000488520		A0A1B0GUL6	1792 aa		11.13	□□□□□ -0.63
USP4-213	ENST00000488520	PRAMEF18	Q5VWM3	479 aa		11.13	□□□□□ -0.63
USP4-213	ENST00000488520	RIC3	Q7Z5B4	369 aa		11.13	□□□□□ -0.63
USP4-213	ENST00000488520	METTL3	Q86U44	580 aa	Known RBP	11.13	□□□□□ -0.63
USP4-213	ENST00000488520	GGA1	Q9UJY5	639 aa		11.13	□□□□□ -0.63
USP4-213	ENST00000488520	CACNA1F	O60840	1977 aa		11.13	□□□□□ -0.63
USP4-213	ENST00000488520	UBE2Q2L	H0YL09	131 aa		11.12	□□□□□ -0.63
USP4-213	ENST00000488520	TBC1D8	O95759	1140 aa		11.12	□□□□□ -0.63
USP4-213	ENST00000488520	DUSP27	Q5VZP5	1158 aa		11.12	□□□□□ -0.63
USP4-213	ENST00000488520	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.12	□□□□□ -0.63
USP4-213	ENST00000488520	MYD88	Q99836	296 aa		11.12	□□□□□ -0.63
USP4-213	ENST00000488520	PHAX	Q9H814	394 aa	Known RBP	11.12	□□□□□ -0.63
USP4-213	ENST00000488520	HYPK	Q9NX55	129 aa		11.12	□□□□□ -0.63
USP4-213	ENST00000488520	HDAC9	Q9UKV0	1011 aa		11.12	□□□□□ -0.63
USP4-213	ENST00000488520	CENPF	P49454	3210 aa		11.11	□□□□□ -0.63
USP4-213	ENST00000488520	LAMB1	P07942	1786 aa		11.11	□□□□□ -0.63
USP4-213	ENST00000488520	ZNF280A	P59817	542 aa	Predicted RBP	11.11	□□□□□ -0.63
USP4-213	ENST00000488520	TTLL12	Q14166	644 aa	Predicted RBP	11.11	□□□□□ -0.63
USP4-213	ENST00000488520	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.11	□□□□□ -0.63
USP4-213	ENST00000488520	AGBL3	Q8NEM8	1001 aa		11.11	□□□□□ -0.63
USP4-213	ENST00000488520	MYOZ2	Q9NPC6	264 aa		11.11	□□□□□ -0.63
USP4-213	ENST00000488520	MBIP	Q9NS73	344 aa		11.11	□□□□□ -0.63
USP4-213	ENST00000488520	PODXL2	Q9NZ53	605 aa		11.11	□□□□□ -0.63
USP4-213	ENST00000488520	KIAA0100	Q14667	2235 aa	Known RBP	11.11	□□□□□ -0.63
USP4-213	ENST00000488520	WTIP	A6NIX2	430 aa	Predicted RBP	11.1	□□□□□ -0.63
USP4-213	ENST00000488520	ELL2	O00472	640 aa	Predicted RBP	11.1	□□□□□ -0.63
USP4-213	ENST00000488520	USP17L8	P0C7I0	530 aa		11.1	□□□□□ -0.63
USP4-213	ENST00000488520	ZNF853	P0CG23	659 aa		11.1	□□□□□ -0.63
USP4-213	ENST00000488520	NBPF9	Q3BBW0	867 aa		11.1	□□□□□ -0.63
USP4-213	ENST00000488520	MXD3	Q9BW11	206 aa		11.1	□□□□□ -0.63
USP4-213	ENST00000488520	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.09	□□□□□ -0.63
USP4-213	ENST00000488520	HOXB7	P09629	217 aa		11.09	□□□□□ -0.63
USP4-213	ENST00000488520	SLFN5	Q08AF3	891 aa		11.09	□□□□□ -0.63
USP4-213	ENST00000488520	TRIM28	Q13263	835 aa	Known RBP	11.09	□□□□□ -0.63
USP4-213	ENST00000488520	PRKG1	Q13976	671 aa		11.09	□□□□□ -0.63
USP4-213	ENST00000488520	CCDC152	Q4G0S7	254 aa		11.09	□□□□□ -0.63
USP4-213	ENST00000488520	ANKRD18A	Q8IVF6	992 aa		11.09	□□□□□ -0.63
USP4-213	ENST00000488520	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.09	□□□□□ -0.63
USP4-213	ENST00000488520	TSR2	Q969E8	191 aa	Known RBP	11.09	□□□□□ -0.63
USP4-213	ENST00000488520	GML	Q99445	158 aa		11.09	□□□□□ -0.63
USP4-213	ENST00000488520	XDH	P47989	1333 aa		11.09	□□□□□ -0.63
USP4-213	ENST00000488520	ZBED9	Q6R2W3	1325 aa		11.09	□□□□□ -0.63
USP4-213	ENST00000488520	USP17L3	A6NCW0	530 aa		11.08	□□□□□ -0.64
USP4-213	ENST00000488520	USP17L4	A6NCW7	530 aa		11.08	□□□□□ -0.64
USP4-213	ENST00000488520	PDE8A	O60658	829 aa		11.08	□□□□□ -0.64
USP4-213	ENST00000488520	ATP2B4	P23634	1241 aa		11.08	□□□□□ -0.64
USP4-213	ENST00000488520	FKBP1B	P68106	108 aa		11.08	□□□□□ -0.64
USP4-213	ENST00000488520	PRPF38B	Q5VTL8	546 aa	Known RBP	11.08	□□□□□ -0.64
USP4-213	ENST00000488520	USP17L1	Q7RTZ2	530 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms