RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 ATG3Q9NT62 314 aa8.23□□□□□ -1.09
SMC4-218ENST00000486711 COL17A1Q9UMD9 1497 aaPredicted RBP8.22□□□□□ -1.09
SMC4-218ENST00000486711 KRTAP9-6A0A140TA67 174 aa8.22□□□□□ -1.09
SMC4-218ENST00000486711 FAM95CA0A1B0GW59 222 aa8.22□□□□□ -1.09
SMC4-218ENST00000486711 CYP11A1P05108 521 aa8.22□□□□□ -1.09
SMC4-218ENST00000486711 GRIA4P48058 902 aa8.22□□□□□ -1.09
SMC4-218ENST00000486711 CPSF6Q16630 551 aaKnown RBP eCLIP8.22□□□□□ -1.09
SMC4-218ENST00000486711 KIAA0319Q5VV43 1072 aa8.22□□□□□ -1.09
SMC4-218ENST00000486711 PAOXQ6QHF9 649 aa8.22□□□□□ -1.09
SMC4-218ENST00000486711 ZFYVE1Q9HBF4 777 aa8.22□□□□□ -1.09
SMC4-218ENST00000486711 PIM2Q9P1W9 311 aa8.22□□□□□ -1.09
SMC4-218ENST00000486711 DRD2P14416 443 aa8.21□□□□□ -1.1
SMC4-218ENST00000486711 ARHGAP4P98171 946 aa8.21□□□□□ -1.1
SMC4-218ENST00000486711 SOX4Q06945 474 aaPredicted RBP8.21□□□□□ -1.1
SMC4-218ENST00000486711 TRIM26Q12899 539 aaPredicted RBP8.21□□□□□ -1.1
SMC4-218ENST00000486711 ECM1Q16610 540 aa8.21□□□□□ -1.1
SMC4-218ENST00000486711 SPRED3Q2MJR0 410 aa8.21□□□□□ -1.1
SMC4-218ENST00000486711 C2CD4AQ8NCU7 369 aaPredicted RBP8.21□□□□□ -1.1
SMC4-218ENST00000486711 DDX54Q8TDD1 881 aaKnown RBP8.21□□□□□ -1.1
SMC4-218ENST00000486711 OAS3Q9Y6K5 1087 aaKnown RBP8.21□□□□□ -1.1
SMC4-218ENST00000486711 CPNE3O75131 537 aaKnown RBP8.2□□□□□ -1.1
SMC4-218ENST00000486711 POU4F3Q15319 338 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 NFKBIBQ15653 356 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 ZNF423Q2M1K9 1284 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 USPL1Q5W0Q7 1092 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 FBXL6Q8N531 539 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 CITED4Q96RK1 184 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 FAM129BQ96TA1 746 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 OSBPL1AQ9BXW6 950 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 PODXL2Q9NZ53 605 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 LEMD3Q9Y2U8 911 aa8.2□□□□□ -1.1
SMC4-218ENST00000486711 WNT11O96014 354 aa8.19□□□□□ -1.1
SMC4-218ENST00000486711 F13BP05160 661 aa8.19□□□□□ -1.1
SMC4-218ENST00000486711 ADH5P11766 374 aa8.19□□□□□ -1.1
SMC4-218ENST00000486711 MAOBP27338 520 aa8.19□□□□□ -1.1
SMC4-218ENST00000486711 CDPF1Q6NVV7 123 aa8.19□□□□□ -1.1
SMC4-218ENST00000486711 FBLIM1Q8WUP2 373 aa8.19□□□□□ -1.1
SMC4-218ENST00000486711 METTL22Q9BUU2 404 aaPredicted RBP8.19□□□□□ -1.1
SMC4-218ENST00000486711 EHD4Q9H223 541 aa8.19□□□□□ -1.1
SMC4-218ENST00000486711 PAX4O43316 350 aa8.18□□□□□ -1.1
SMC4-218ENST00000486711 ADAMTS4O75173 837 aa8.18□□□□□ -1.1
SMC4-218ENST00000486711 B3GALT4O96024 378 aa8.18□□□□□ -1.1
SMC4-218ENST00000486711 ORC1Q13415 861 aa8.18□□□□□ -1.1
SMC4-218ENST00000486711 EZH1Q92800 747 aaPredicted RBP8.18□□□□□ -1.1
SMC4-218ENST00000486711 CORO1BQ9BR76 489 aa8.18□□□□□ -1.1
SMC4-218ENST00000486711 ZNF576Q9H609 170 aa8.18□□□□□ -1.1
SMC4-218ENST00000486711 NPHS2Q9NP85 383 aa8.18□□□□□ -1.1
SMC4-218ENST00000486711 ITPKAP23677 461 aa8.17□□□□□ -1.1
SMC4-218ENST00000486711 HOXA10P31260 410 aaPredicted RBP8.17□□□□□ -1.1
SMC4-218ENST00000486711 AEBP1Q8IUX7 1158 aa8.17□□□□□ -1.1
SMC4-218ENST00000486711 DNAJC25Q9H1X3 360 aa8.17□□□□□ -1.1
SMC4-218ENST00000486711 CTSBP07858 339 aa8.16□□□□□ -1.1
SMC4-218ENST00000486711 FOSL1P15407 271 aa8.16□□□□□ -1.1
SMC4-218ENST00000486711 PTPN12Q05209 780 aaKnown RBP8.16□□□□□ -1.1
SMC4-218ENST00000486711 TXNDC2Q86VQ3 553 aa8.16□□□□□ -1.1
SMC4-218ENST00000486711 TBC1D32Q96NH3 1257 aa8.16□□□□□ -1.1
SMC4-218ENST00000486711 RAD18Q9NS91 495 aa8.16□□□□□ -1.1
SMC4-218ENST00000486711 PRKAG2Q9UGJ0 569 aa8.16□□□□□ -1.1
SMC4-218ENST00000486711 ACTL7BQ9Y614 415 aa8.16□□□□□ -1.1
SMC4-218ENST00000486711 MAP7Q14244 749 aa8.15□□□□□ -1.1
SMC4-218ENST00000486711 AKAP4Q5JQC9 854 aa8.15□□□□□ -1.1
SMC4-218ENST00000486711 ZAR1Q86SH2 424 aa8.15□□□□□ -1.1
SMC4-218ENST00000486711 TMC1Q8TDI8 760 aa8.15□□□□□ -1.1
SMC4-218ENST00000486711 KRTAP4-12Q9BQ66 201 aa8.15□□□□□ -1.1
SMC4-218ENST00000486711 TRIM56Q9BRZ2 755 aaKnown RBP8.15□□□□□ -1.1
SMC4-218ENST00000486711 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.14□□□□□ -1.11
SMC4-218ENST00000486711 PATL2C9JE40 543 aaKnown RBP8.14□□□□□ -1.11
SMC4-218ENST00000486711 TAL1P17542 331 aaPredicted RBP8.14□□□□□ -1.11
SMC4-218ENST00000486711 AP3B2Q13367 1082 aa8.14□□□□□ -1.11
SMC4-218ENST00000486711 MSMPQ1L6U9 139 aa8.14□□□□□ -1.11
SMC4-218ENST00000486711 PRPF40BQ6NWY9 871 aaKnown RBP8.14□□□□□ -1.11
SMC4-218ENST00000486711 DYMQ7RTS9 669 aa8.14□□□□□ -1.11
SMC4-218ENST00000486711 CCDC74AQ96AQ1 378 aa8.14□□□□□ -1.11
SMC4-218ENST00000486711 ANGEL1Q9UNK9 670 aaKnown RBP8.14□□□□□ -1.11
SMC4-218ENST00000486711 AP4E1Q9UPM8 1137 aa8.14□□□□□ -1.11
SMC4-218ENST00000486711 EIF1AYO14602 144 aaKnown RBP8.13□□□□□ -1.11
SMC4-218ENST00000486711 GPR182O15218 404 aa8.13□□□□□ -1.11
SMC4-218ENST00000486711 GADD45BO75293 160 aaPredicted RBP8.13□□□□□ -1.11
SMC4-218ENST00000486711 RAB6AP20340 208 aa8.13□□□□□ -1.11
SMC4-218ENST00000486711 CCER1Q8TC90 406 aaPredicted RBP8.13□□□□□ -1.11
SMC4-218ENST00000486711 DMRTB1Q96MA1 342 aa8.13□□□□□ -1.11
SMC4-218ENST00000486711 NIF3L1Q9GZT8 377 aa8.13□□□□□ -1.11
SMC4-218ENST00000486711 ABCB6Q9NP58 842 aa8.13□□□□□ -1.11
SMC4-218ENST00000486711 TRAK1Q9UPV9 953 aa8.13□□□□□ -1.11
SMC4-218ENST00000486711 CYP26A1O43174 497 aa8.12□□□□□ -1.11
SMC4-218ENST00000486711 ECEL1O95672 775 aa8.12□□□□□ -1.11
SMC4-218ENST00000486711 ADMP35318 185 aa8.12□□□□□ -1.11
SMC4-218ENST00000486711 PDE3AQ14432 1141 aa8.12□□□□□ -1.11
SMC4-218ENST00000486711 RPS26P11Q5JNZ5 115 aaPredicted RBP8.12□□□□□ -1.11
SMC4-218ENST00000486711 SHISA5Q8N114 240 aa8.12□□□□□ -1.11
SMC4-218ENST00000486711 SYNGAP1Q96PV0 1343 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 AOC2O75106 756 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 IGHA2P01877 340 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 NFICP08651 508 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 CYP27A1Q02318 531 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 VSIG10LQ86VR7 867 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 GATA6Q92908 595 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 ALKBH8Q96BT7 664 aaKnown RBP8.11□□□□□ -1.11
SMC4-218ENST00000486711 CSRNP1Q96S65 589 aa8.11□□□□□ -1.11
SMC4-218ENST00000486711 SEMA6CQ9H3T2 930 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms