RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RSBN1LQ6PCB5 846 aaPredicted RBP9.89□□□□□ -0.83
USP40-216ENST00000485943 AGBL3Q8NEM8 1001 aa9.89□□□□□ -0.83
USP40-216ENST00000485943 CD209Q9NNX6 404 aa9.89□□□□□ -0.83
USP40-216ENST00000485943 GPRC5DQ9NZD1 345 aa9.89□□□□□ -0.83
USP40-216ENST00000485943 PA2G4Q9UQ80 394 aaKnown RBP9.89□□□□□ -0.83
USP40-216ENST00000485943 MYH13Q9UKX3 1938 aa9.89□□□□□ -0.83
USP40-216ENST00000485943 EPS15P42566 896 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 RRP1P56182 461 aaKnown RBP9.88□□□□□ -0.83
USP40-216ENST00000485943 PTPN12Q05209 780 aaKnown RBP9.88□□□□□ -0.83
USP40-216ENST00000485943 KIF4BQ2VIQ3 1234 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 TBC1D10BQ4KMP7 808 aaPredicted RBP9.88□□□□□ -0.83
USP40-216ENST00000485943 CCDC158Q5M9N0 1113 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 STRIP1Q5VSL9 837 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 KIAA0825Q8IV33 1275 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 SULF1Q8IWU6 871 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 TBC1D22AQ8WUA7 517 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 DPF2Q92785 391 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 KAZALD1Q96I82 304 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 ZNF408Q9H9D4 720 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 TMOD2Q9NZR1 351 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 IQSEC3Q9UPP2 1182 aaPredicted RBP9.88□□□□□ -0.83
USP40-216ENST00000485943 JAG2Q9Y219 1238 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 RIPOR2Q9Y4F9 1068 aa9.88□□□□□ -0.83
USP40-216ENST00000485943 MAST3O60307 1309 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 YDJCA8MPS7 323 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 RLBP1P12271 317 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 NF2P35240 595 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 MMP14P50281 582 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 ATP8B2P98198 1209 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 DLGAP5Q15398 846 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 TTC39AQ5SRH9 613 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 RPAP2Q8IXW5 612 aaPredicted RBP9.87□□□□□ -0.83
USP40-216ENST00000485943 ZGPATQ8N5A5 531 aaKnown RBP9.87□□□□□ -0.83
USP40-216ENST00000485943 NOL10Q9BSC4 688 aaKnown RBP9.87□□□□□ -0.83
USP40-216ENST00000485943 COPRSQ9NQ92 184 aa9.87□□□□□ -0.83
USP40-216ENST00000485943 GRXCR2A6NFK2 248 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 SNAP23O00161 211 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 ZBTB7BO15156 539 aaPredicted RBP9.86□□□□□ -0.83
USP40-216ENST00000485943 VIL1P09327 827 aaKnown RBP9.86□□□□□ -0.83
USP40-216ENST00000485943 OSBPP22059 807 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 SCNN1DP51172 638 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 APLP1P51693 650 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 TFCP2Q12800 502 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 TTLL12Q14166 644 aaPredicted RBP9.86□□□□□ -0.83
USP40-216ENST00000485943 MFSD14BQ5SR56 506 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 SLF2Q8IX21 1173 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 CLASRPQ8N2M8 674 aaKnown RBP9.86□□□□□ -0.83
USP40-216ENST00000485943 DUOX1Q9NRD9 1551 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 DENND2AQ9ULE3 1009 aa9.86□□□□□ -0.83
USP40-216ENST00000485943 ABT1Q9ULW3 272 aaKnown RBP9.86□□□□□ -0.83
USP40-216ENST00000485943 PNMA6EA0A0J9YXQ4 647 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 A0A1B0GUL7 405 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 IFIT2P09913 472 aaKnown RBP9.85□□□□□ -0.83
USP40-216ENST00000485943 KLRK1P26718 216 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 BCAMP50895 628 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 MTX1Q13505 466 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 MAP1SQ66K74 1059 aaPredicted RBP9.85□□□□□ -0.83
USP40-216ENST00000485943 SPTY2D1Q68D10 685 aaPredicted RBP9.85□□□□□ -0.83
USP40-216ENST00000485943 C15orf52Q6ZUT6 534 aaKnown RBP9.85□□□□□ -0.83
USP40-216ENST00000485943 CDC37L1Q7L3B6 337 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 SAMD7Q7Z3H4 446 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 TXNRD3Q86VQ6 643 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 DZIP1Q86YF9 867 aaKnown RBP9.85□□□□□ -0.83
USP40-216ENST00000485943 CNTROBQ8N137 903 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 WDR66Q8TBY9 1149 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 PTCD2Q8WV60 388 aaKnown RBP9.85□□□□□ -0.83
USP40-216ENST00000485943 GPATCH3Q96I76 525 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 MYOZ2Q9NPC6 264 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 KCNQ5Q9NR82 932 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 ABCF2Q9UG63 623 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 TTF2Q9UNY4 1162 aaKnown RBP9.85□□□□□ -0.83
USP40-216ENST00000485943 A0A1B0GUL6 1792 aa9.85□□□□□ -0.83
USP40-216ENST00000485943 COL4A1P02462 1669 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 SNED1Q8TER0 1413 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 EVI5O60447 810 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 SASH1O94885 1247 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 NEFLP07196 543 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 UQCRFS1P1P0C7P4 283 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 IL1R1P14778 569 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 HSPA6P17066 643 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 RFX5P48382 616 aaPredicted RBP9.84□□□□□ -0.83
USP40-216ENST00000485943 GRM1Q13255 1194 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 CEP85Q6P2H3 762 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 KRT26Q7Z3Y9 468 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 KIF1BPQ96EK5 621 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 VEZTQ9HBM0 779 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 EXOC6BQ9Y2D4 811 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 LTBP1Q14766 1721 aa9.84□□□□□ -0.83
USP40-216ENST00000485943 RAB11FIP3O75154 756 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 SLC34A2O95436 690 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 LDHBP07195 334 aaKnown RBP9.83□□□□□ -0.84
USP40-216ENST00000485943 CENPBP07199 599 aaPredicted RBP9.83□□□□□ -0.84
USP40-216ENST00000485943 TNNI2P48788 182 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 TIMM10P62072 90 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 TNFAIP1Q13829 316 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 SCARF1Q14162 830 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 AACSQ86V21 672 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 SSH3Q8TE77 659 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 DDX12PQ92771 950 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 TEKT1Q969V4 418 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms