RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 LAMB1P07942 1786 aa14.39□□□□□ -0.11
TTC28-206ENST00000480563 CEP290O15078 2479 aa14.38□□□□□ -0.11
TTC28-206ENST00000480563 TNNI2P48788 182 aa14.38□□□□□ -0.11
TTC28-206ENST00000480563 CCDC57Q2TAC2 916 aa14.38□□□□□ -0.11
TTC28-206ENST00000480563 LMBR1LQ6UX01 489 aa14.38□□□□□ -0.11
TTC28-206ENST00000480563 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.38□□□□□ -0.11
TTC28-206ENST00000480563 TDRD7Q8NHU6 1098 aaKnown RBP14.38□□□□□ -0.11
TTC28-206ENST00000480563 ZNF594Q96JF6 807 aaPredicted RBP14.38□□□□□ -0.11
TTC28-206ENST00000480563 CNNM1Q9NRU3 951 aa14.38□□□□□ -0.11
TTC28-206ENST00000480563 CENPFP49454 3210 aa14.37□□□□□ -0.11
TTC28-206ENST00000480563 TLR2O60603 784 aa14.37□□□□□ -0.11
TTC28-206ENST00000480563 HIBADHP31937 336 aaKnown RBP14.37□□□□□ -0.11
TTC28-206ENST00000480563 KIF22Q14807 665 aa14.37□□□□□ -0.11
TTC28-206ENST00000480563 TAF7LQ5H9L4 462 aa14.37□□□□□ -0.11
TTC28-206ENST00000480563 ARHGAP39Q9C0H5 1083 aa14.37□□□□□ -0.11
TTC28-206ENST00000480563 ECM29Q5VYK3 1845 aa14.36□□□□□ -0.11
TTC28-206ENST00000480563 TRIOBPQ9H2D6 2365 aa14.36□□□□□ -0.11
TTC28-206ENST00000480563 SPDYE5A6NIY4 337 aa14.36□□□□□ -0.11
TTC28-206ENST00000480563 CETPP11597 493 aa14.36□□□□□ -0.11
TTC28-206ENST00000480563 CRKP46108 304 aa14.36□□□□□ -0.11
TTC28-206ENST00000480563 GYG1P46976 350 aa14.36□□□□□ -0.11
TTC28-206ENST00000480563 LACTBP83111 547 aaPredicted RBP14.36□□□□□ -0.11
TTC28-206ENST00000480563 EPHA10Q5JZY3 1008 aa14.36□□□□□ -0.11
TTC28-206ENST00000480563 WWC1Q8IX03 1113 aa14.36□□□□□ -0.11
TTC28-206ENST00000480563 GNRH1P01148 92 aa14.35□□□□□ -0.11
TTC28-206ENST00000480563 UBE4AQ14139 1066 aa14.35□□□□□ -0.11
TTC28-206ENST00000480563 CCDC27Q2M243 656 aa14.35□□□□□ -0.11
TTC28-206ENST00000480563 BEND3Q5T5X7 828 aa14.35□□□□□ -0.11
TTC28-206ENST00000480563 CHRDL2Q6WN34 429 aa14.35□□□□□ -0.11
TTC28-206ENST00000480563 FAM84BQ96KN1 310 aaPredicted RBP14.35□□□□□ -0.11
TTC28-206ENST00000480563 ZCCHC17Q9NP64 241 aaKnown RBP14.35□□□□□ -0.11
TTC28-206ENST00000480563 BTBD19C9JJ37 291 aa14.34□□□□□ -0.11
TTC28-206ENST00000480563 F6X3S4 739 aa14.34□□□□□ -0.11
TTC28-206ENST00000480563 PRMT2P55345 433 aa14.34□□□□□ -0.11
TTC28-206ENST00000480563 ERO1BQ86YB8 467 aa14.34□□□□□ -0.11
TTC28-206ENST00000480563 DPF3Q92784 378 aa14.34□□□□□ -0.11
TTC28-206ENST00000480563 SNCAIPQ9Y6H5 919 aa14.34□□□□□ -0.11
TTC28-206ENST00000480563 IRF6O14896 467 aa14.33□□□□□ -0.12
TTC28-206ENST00000480563 ECM2O94769 699 aaPredicted RBP14.33□□□□□ -0.12
TTC28-206ENST00000480563 CACNB3P54284 484 aa14.33□□□□□ -0.12
TTC28-206ENST00000480563 SNAPC2Q13487 334 aa14.33□□□□□ -0.12
TTC28-206ENST00000480563 GRIK5Q16478 980 aa14.33□□□□□ -0.12
TTC28-206ENST00000480563 ZKSCAN4Q969J2 545 aaPredicted RBP14.33□□□□□ -0.12
TTC28-206ENST00000480563 WRNIP1Q96S55 665 aa14.33□□□□□ -0.12
TTC28-206ENST00000480563 OTOFQ9HC10 1997 aa14.33□□□□□ -0.12
TTC28-206ENST00000480563 BRCA2P51587 3418 aa14.32□□□□□ -0.12
TTC28-206ENST00000480563 GRM8O00222 908 aa14.32□□□□□ -0.12
TTC28-206ENST00000480563 VAMP4O75379 141 aa14.32□□□□□ -0.12
TTC28-206ENST00000480563 HDLBPQ00341 1268 aaKnown RBP14.32□□□□□ -0.12
TTC28-206ENST00000480563 MTFR1Q15390 333 aa14.32□□□□□ -0.12
TTC28-206ENST00000480563 PUS3Q9BZE2 481 aaKnown RBP14.32□□□□□ -0.12
TTC28-206ENST00000480563 RBM27Q9P2N5 1060 aaKnown RBP14.32□□□□□ -0.12
TTC28-206ENST00000480563 IQSEC3Q9UPP2 1182 aaPredicted RBP14.32□□□□□ -0.12
TTC28-206ENST00000480563 IL16Q14005 1332 aa14.32□□□□□ -0.12
TTC28-206ENST00000480563 PSMC4P43686 418 aa14.31□□□□□ -0.12
TTC28-206ENST00000480563 CHAF1AQ13111 956 aaPredicted RBP14.31□□□□□ -0.12
TTC28-206ENST00000480563 PPIL2Q13356 520 aa14.31□□□□□ -0.12
TTC28-206ENST00000480563 C17orf99Q6UX52 265 aa14.31□□□□□ -0.12
TTC28-206ENST00000480563 SHISA4Q96DD7 197 aa14.31□□□□□ -0.12
TTC28-206ENST00000480563 HOOK2Q96ED9 719 aa14.31□□□□□ -0.12
TTC28-206ENST00000480563 C9orf78Q9NZ63 289 aaPredicted RBP14.31□□□□□ -0.12
TTC28-206ENST00000480563 SRRDQ9UH36 339 aa14.31□□□□□ -0.12
TTC28-206ENST00000480563 CPA4Q9UI42 421 aa14.31□□□□□ -0.12
TTC28-206ENST00000480563 HOXD10P28358 340 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 CTGFP29279 349 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 FBXO33Q7Z6M2 555 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 FAM83AQ86UY5 434 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 VPS37DQ86XT2 251 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 NKX2-3Q8TAU0 364 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 TBC1D22AQ8WUA7 517 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 TEKT1Q969V4 418 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 TRIM47Q96LD4 638 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 TMOD2Q9NZR1 351 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 FANCIQ9NVI1 1328 aa14.3□□□□□ -0.12
TTC28-206ENST00000480563 A0A1B0GUL6 1792 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 FRAT2O75474 233 aaPredicted RBP14.29□□□□□ -0.12
TTC28-206ENST00000480563 FMNL1O95466 1100 aaPredicted RBP14.29□□□□□ -0.12
TTC28-206ENST00000480563 OSBPP22059 807 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 GRK4P32298 578 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 PPATQ06203 517 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 FKBP1CQ5VVH2 108 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 DCAF15Q66K64 600 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 RAET1EQ8TD07 263 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 ZDHHC15Q96MV8 337 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 MRIQ9BWK5 157 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 RIPOR2Q9Y4F9 1068 aa14.29□□□□□ -0.12
TTC28-206ENST00000480563 PDHXO00330 501 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 GJB1P08034 283 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 CCL5P13501 91 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 GJA8P48165 433 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 EXOSC9Q06265 439 aaKnown RBP14.28□□□□□ -0.12
TTC28-206ENST00000480563 CAVIN4Q5BKX8 364 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 APOBEC3HQ6NTF7 200 aaKnown RBP14.28□□□□□ -0.12
TTC28-206ENST00000480563 MROH5Q6ZUA9 1318 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 MIGA2Q7L4E1 593 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 ANKRD23Q86SG2 305 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.28□□□□□ -0.12
TTC28-206ENST00000480563 HTATIP2Q9BUP3 242 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 ZNF341Q9BYN7 854 aa14.28□□□□□ -0.12
TTC28-206ENST00000480563 ALDH1L1O75891 902 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms