RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 KCTD15Q96SI1 283 aaPredicted RBP8.42□□□□□ -1.06
USP48-208ENST00000479177 TEX13AQ9BXU3 409 aaPredicted RBP8.42□□□□□ -1.06
USP48-208ENST00000479177 MAP4K5Q9Y4K4 846 aa8.42□□□□□ -1.06
USP48-208ENST00000479177 PCDHB9Q9Y5E1 797 aa8.42□□□□□ -1.06
USP48-208ENST00000479177 ATP10DQ9P241 1426 aa8.42□□□□□ -1.06
USP48-208ENST00000479177 MAN1A2O60476 641 aa8.41□□□□□ -1.06
USP48-208ENST00000479177 GDF11O95390 407 aa8.41□□□□□ -1.06
USP48-208ENST00000479177 ZIC2O95409 532 aaPredicted RBP8.41□□□□□ -1.06
USP48-208ENST00000479177 STARD3NLO95772 234 aa8.41□□□□□ -1.06
USP48-208ENST00000479177 A1BGP04217 495 aa8.41□□□□□ -1.06
USP48-208ENST00000479177 CYP19A1P11511 503 aaPredicted RBP8.41□□□□□ -1.06
USP48-208ENST00000479177 PIP4K2AP48426 406 aaPredicted RBP8.41□□□□□ -1.06
USP48-208ENST00000479177 RAB15P59190 212 aa8.41□□□□□ -1.06
USP48-208ENST00000479177 NR1H3Q13133 447 aa8.41□□□□□ -1.06
USP48-208ENST00000479177 INTS3Q68E01 1043 aaKnown RBP8.41□□□□□ -1.06
USP48-208ENST00000479177 DZIP3Q86Y13 1208 aaKnown RBP8.41□□□□□ -1.06
USP48-208ENST00000479177 ITPRIPQ8IWB1 547 aa8.41□□□□□ -1.06
USP48-208ENST00000479177 XAGE3Q8WTP9 111 aa8.41□□□□□ -1.06
USP48-208ENST00000479177 F6X3S4 739 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 APBB1O00213 710 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 TRIM37O94972 964 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 MYL6BP14649 208 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 VAC14Q08AM6 782 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 NR5A1Q13285 461 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 INTS6LQ5JSJ4 861 aaKnown RBP8.4□□□□□ -1.06
USP48-208ENST00000479177 LINC00116Q8NCU8 138 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 PPP4R2Q9NY27 417 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 DDX19BQ9UMR2 479 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 ZBTB1Q9Y2K1 713 aa8.4□□□□□ -1.06
USP48-208ENST00000479177 BCORQ6W2J9 1755 aa8.4□□□□□ -1.07
USP48-208ENST00000479177 C4BP0C0L5 1744 aa8.4□□□□□ -1.07
USP48-208ENST00000479177 SCN7AQ01118 1682 aa8.4□□□□□ -1.07
USP48-208ENST00000479177 CNTNAP4Q9C0A0 1308 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 AFDNP55196 1824 aaKnown RBP8.39□□□□□ -1.07
USP48-208ENST00000479177 PI4KAP2A4QPH2 592 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 DDX58O95786 925 aaKnown RBP8.39□□□□□ -1.07
USP48-208ENST00000479177 CRKLP46109 303 aaKnown RBP8.39□□□□□ -1.07
USP48-208ENST00000479177 CCT4P50991 539 aaKnown RBP8.39□□□□□ -1.07
USP48-208ENST00000479177 KSR2Q6VAB6 950 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 ILDR2Q71H61 639 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 COPS6Q7L5N1 327 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 PI4KAP1Q8N8J0 262 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 DNAAF4Q8WXU2 420 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 CCDC87Q9NVE4 849 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 ANKRD36CQ5JPF3 1778 aa8.39□□□□□ -1.07
USP48-208ENST00000479177 IBTKQ9P2D0 1353 aaPredicted RBP8.38□□□□□ -1.07
USP48-208ENST00000479177 AIMP1Q12904 312 aaKnown RBP8.38□□□□□ -1.07
USP48-208ENST00000479177 AAMPQ13685 434 aa8.38□□□□□ -1.07
USP48-208ENST00000479177 INTS5Q6P9B9 1019 aaKnown RBP8.38□□□□□ -1.07
USP48-208ENST00000479177 SLC4A10Q6U841 1118 aa8.38□□□□□ -1.07
USP48-208ENST00000479177 CNTNAP3BQ96NU0 1288 aa8.38□□□□□ -1.07
USP48-208ENST00000479177 CNTNAP3Q9BZ76 1288 aa8.38□□□□□ -1.07
USP48-208ENST00000479177 DNMT3LQ9UJW3 386 aa8.38□□□□□ -1.07
USP48-208ENST00000479177 CCNL1Q9UK58 526 aaPredicted RBP8.38□□□□□ -1.07
USP48-208ENST00000479177 MAP3K2Q9Y2U5 619 aa8.38□□□□□ -1.07
USP48-208ENST00000479177 UBR3Q6ZT12 1888 aa8.38□□□□□ -1.07
USP48-208ENST00000479177 C4AP0C0L4 1744 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 COL15A1P39059 1388 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 IL6STP40189 918 aaPredicted RBP8.37□□□□□ -1.07
USP48-208ENST00000479177 EIF5P55010 431 aaKnown RBP8.37□□□□□ -1.07
USP48-208ENST00000479177 KCNQ4P56696 695 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 BEND3Q5T5X7 828 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 PPP1R26Q5T8A7 1209 aaPredicted RBP8.37□□□□□ -1.07
USP48-208ENST00000479177 TTLL7Q6ZT98 887 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 CCDC116Q8IYX3 515 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 PLBD2Q8NHP8 589 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 TMPRSS4Q9NRS4 437 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 ZBTB40Q9NUA8 1239 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 NUP98P52948 1817 aa8.37□□□□□ -1.07
USP48-208ENST00000479177 ZBTB7BO15156 539 aaPredicted RBP8.36□□□□□ -1.07
USP48-208ENST00000479177 ALDH1L1O75891 902 aa8.36□□□□□ -1.07
USP48-208ENST00000479177 SLC27A3Q5K4L6 730 aa8.36□□□□□ -1.07
USP48-208ENST00000479177 LINS1Q8NG48 757 aa8.36□□□□□ -1.07
USP48-208ENST00000479177 MEIS3Q99687 375 aa8.36□□□□□ -1.07
USP48-208ENST00000479177 METTL22Q9BUU2 404 aaPredicted RBP8.36□□□□□ -1.07
USP48-208ENST00000479177 SRCIN1Q9C0H9 1055 aa8.36□□□□□ -1.07
USP48-208ENST00000479177 CHMP4BQ9H444 224 aaKnown RBP8.36□□□□□ -1.07
USP48-208ENST00000479177 LRRC4BQ9NT99 713 aa8.36□□□□□ -1.07
USP48-208ENST00000479177 TUBGCP6Q96RT7 1819 aa8.36□□□□□ -1.07
USP48-208ENST00000479177 MAP3K15Q6ZN16 1313 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 ESPNB1AK53 854 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 ERVH48-1M5A8F1 160 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 IGKV5-2P06315 115 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 BMP2P12643 396 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 CBLBQ13191 982 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 NBPF20Q3BBV1 942 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 B4GALNT3Q6L9W6 998 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 KIF6Q6ZMV9 814 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 CCDC136Q96JN2 1154 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 MYD88Q99836 296 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 PRM3Q9NNZ6 103 aa8.35□□□□□ -1.07
USP48-208ENST00000479177 CDV3Q9UKY7 258 aaKnown RBP8.35□□□□□ -1.07
USP48-208ENST00000479177 ZNF330Q9Y3S2 320 aaPredicted RBP8.35□□□□□ -1.07
USP48-208ENST00000479177 NEURL1BA8MQ27 555 aa8.34□□□□□ -1.07
USP48-208ENST00000479177 PLSCR1O15162 318 aa8.34□□□□□ -1.07
USP48-208ENST00000479177 APBA3O96018 575 aa8.34□□□□□ -1.07
USP48-208ENST00000479177 NEXNQ0ZGT2 675 aa8.34□□□□□ -1.07
USP48-208ENST00000479177 TXNRD1Q16881 649 aa8.34□□□□□ -1.07
USP48-208ENST00000479177 CWF19L2Q2TBE0 894 aaKnown RBP8.34□□□□□ -1.07
USP48-208ENST00000479177 LINC00528Q8N1L1 170 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms